Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2387 ATGGGTAGATGTCGAACATTTTTGCAAGTTAAAGGCGAAGCCTTTCTGCCTCCTTCAGAGCAACCACCATTTTTTCTTTCACCGCCCAATGTCGGATCCGGTAGTTTCATGATGAATTTAAACGACAAGGTCAGTCCAAGTATGCTACTCATCATTGTAATTTTGGCTATTGTTTTCTTCGTTTCTGGGTTGCTTCACCTCCTCGTCAGATTCCTGTGGAGACCTCAAAGCAGTGAGCCAGATGACATGGACAACGTGACTGCTCTTCAAGGCCAATTGCAGCAACTCTTCCACCTCCATGATGCTGGGGTTGACCAGTCCTTCATAGATACCCTTCCTGTCTTCCATTACAAGGCCATCATAGGATTGAAGAACCCTTTTGATTGCGCTGTGTGCTTGTGTGAGTTTGAAGCTGATGATAAACTCAGATTGTTACCCAAATGTAGCCACGCCTTTCACATGGAGTGCATAGATACCTGGCTCTTGTCCCACTCCACTTGTCCTCTTTGCAGAGCTAGCTTATTCCCTGATTTGTCTCCAAACACCGGCTTCTCTCCCTTCGTCTTAGTTCTAGAATCCAGGAGTGAGAGTTCCAGAGAGATTGTTATAGAAAGAGAGAGTAACGTTGCTAGGACCAGTTCTGTGACTAGCATAGATTTGTCACACAAATCGGGTGACTCAGGCTCAGATAACCATAACAATAACAACCCGGATGAGAATATAGTTGGGGAATCACATGAGAAAGTGGTTATTGTTAAGCTGGGAAAGTTCAGGAATGTGGAAGATGGTCAAGGAAGTAGCGCCAACATCGCTGATGCTAGAAGGTGTTTTTCTATGGGGTCCTTTGCGTATGTTATGGACGAGAATTCTTCACTTCAGGTACCCATGAGAGCCACGATTAAGAAGCAGTCAAGTAAGAAACCTGCTTTGCCCTTAACGCCAGGACACAGGATGGCGATGTCAGAGTGTGACTGTGAATCCACGAGAGATTTCAAATTCACAGGTTTTGACATTTCTGGGACTGGAGGTACAAGCAAGAAAGAGAGTTTTTCCATTTCAAAGATTTGGCTTCGGGGACAGAAAGAAGAGAAGCCAAATGCAATGGCGGATTCGTCAAGAAGGGCTGTTTCCTTTCGGTTCTCAGCACAGAATGCAACGAATGATTCTTCGAAGGCCAAGAATGGAAAATTTGACACGAGGAGCGTTAAATCTGAGATGGAGATTGGAAAATGGGAAAACGATGAGGAAAGTCAAAGTTGTTATAGCATGGATTCTCAGGGTAGAGCACCCTCTTTCGCGAGGAGGACTCTGCTTTGGCTTACTGGAAGACAGAATAAGGTTGTTCACTCATCCTCTGCTTCCAACTTCTAG 1371 0.45 MGRCRTFLQVKGEAFLPPSEQPPFFLSPPNVGSGSFMMNLNDKVSPSMLLIIVILAIVFFVSGLLHLLVRFLWRPQSSEPDDMDNVTALQGQLQQLFHLHDAGVDQSFIDTLPVFHYKAIIGLKNPFDCAVCLCEFEADDKLRLLPKCSHAFHMECIDTWLLSHSTCPLCRASLFPDLSPNTGFSPFVLVLESRSESSREIVIERESNVARTSSVTSIDLSHKSGDSGSDNHNNNNPDENIVGESHEKVVIVKLGKFRNVEDGQGSSANIADARRCFSMGSFAYVMDENSSLQVPMRATIKKQSSKKPALPLTPGHRMAMSECDCESTRDFKFTGFDISGTGGTSKKESFSISKIWLRGQKEEKPNAMADSSRRAVSFRFSAQNATNDSSKAKNGKFDTRSVKSEMEIGKWENDEESQSCYSMDSQGRAPSFARRTLLWLTGRQNKVVHSSSASNF 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2387 456 CDD RING-H2_EL5-like 128 171 - -
Bisa08g2387 456 ProSiteProfiles Zinc finger RING-type profile. 129 171 IPR001841 -
Bisa08g2387 456 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF13-LIKE 41 356 - -
Bisa08g2387 456 MobiDBLite consensus disorder prediction 409 428 - -
Bisa08g2387 456 MobiDBLite consensus disorder prediction 213 240 - -
Bisa08g2387 456 FunFam RING-H2 finger protein ATL46 91 176 - -
Bisa08g2387 456 MobiDBLite consensus disorder prediction 382 401 - -
Bisa08g2387 456 Pfam Ring finger domain 128 171 IPR001841 -
Bisa08g2387 456 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 103 175 IPR013083 -
Bisa08g2387 456 MobiDBLite consensus disorder prediction 213 243 - -
Bisa08g2387 456 SMART ring_2 129 170 IPR001841 -
Bisa08g2387 456 SUPERFAMILY RING/U-box 108 178 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2387 Bisa-ChrBisa08 56805882 56807252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2387 33 454 C3H Transcription Factor Family AT2G18650 47.427 7.81e-104 314
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2387 08 56805882 56807252 Bisa08g2387 08 56805882 56807252 ECH