Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2350 ATGGCGAAAATATCACAGCGAAGCCACAAGAACAATGGCAGCACCAACGTTAACAACAGTCTCAACGGAACCAACACTATGCCCACCAAAGTAAAACGAACGAGGAGAAGTGTCCCTAGAGACTCTCCTCGGCAACGTAGCTCTGGATACCGAGGAGTGACTAGGCACCGGTGGACTGGTAGGAATGAAGCTCATTTGTGGGACAAGGATTGTTGGAACGAGTCGCAAAACAAGAAAGGAAGACAAGGTGCTTACAATGATGAAGAAGCAGCAGCACATGCTTATGATCTAGCAGCATTGAAATATTGGGGTCAAGATGCCATACTTAACTTTCCGTTGTCGACCTACCACAACGAACTGAAAGAAATGGGGGGTCAATCAAGGGAAGAGTATGTTGGATCATTACGGAGGAAAAGCAGCGGTTTTTCCCGGGGAGTTTCTAAATACAGAGGCGTTGCTAGACACCATCATAACGGAAGGTGGGAAGCTCGGATTGGCAGAGTTTTCGGCAATAAATATCTCTATCTTGGGACTTATGCTACCCAAGAAGAAGCTGCCACAGCTTATGATATGGCGGCTATAGAATACCGTGGGCTTAACGCCGTTACCAATTTCGACCTCAGCCGTTATATTAAGTGGCTTAAGCCCAGTATCAATAGCAAACATAGTAACACGATTAGCACTAATCTCACTGAAGGTGATTATAACCCTAACGGCAACATCGACTTAACCACACCAAGCCTTAATCAAGAACAGGGGTTTAGCTTTTTCCTCAACAAGCAGGACTCGTTCAGCATTAACGGAGAGGATCAAGCCACGTTGACACAGCCTAGGCTAGCAGCAACTGCCACGTCAGCCCTACGGCTTCTGCTTCAGTCGTCCAAGTTCAAGGAAATGATGGAGATGTCGTCCGCCGCTGATTTACCGGCGCCAGAATCCGAATTTCCGCCGCAGTGCCGGTTTCCCGATGACATTCAGACGTACTTTGAGTGCGAAGACTCCAACAGTAGTGGGGAAGGGGATGATTATATCATGTTCAGCGAGCTCAGCTCCTTCGTGCCTCCAATTTTCCATTGTGACAACTTCGAGACTTAA 1095 0.4749 MAKISQRSHKNNGSTNVNNSLNGTNTMPTKVKRTRRSVPRDSPRQRSSGYRGVTRHRWTGRNEAHLWDKDCWNESQNKKGRQGAYNDEEAAAHAYDLAALKYWGQDAILNFPLSTYHNELKEMGGQSREEYVGSLRRKSSGFSRGVSKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYATQEEAATAYDMAAIEYRGLNAVTNFDLSRYIKWLKPSINSKHSNTISTNLTEGDYNPNGNIDLTTPSLNQEQGFSFFLNKQDSFSINGEDQATLTQPRLAATATSALRLLLQSSKFKEMMEMSSAADLPAPESEFPPQCRFPDDIQTYFECEDSNSSGEGDDYIMFSELSSFVPPIFHCDNFET 364
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2350 364 ProSiteProfiles AP2/ERF domain profile. 49 112 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 CDD AP2 147 208 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 SMART rav1_2 148 212 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 SMART rav1_2 49 118 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 SUPERFAMILY DNA-binding domain 147 208 IPR016177 GO:0003677
Bisa08g2350 364 MobiDBLite consensus disorder prediction 1 32 - -
Bisa08g2350 364 Gene3D AP2/ERF domain 147 208 IPR036955 GO:0003700|GO:0006355
Bisa08g2350 364 Gene3D AP2/ERF domain 49 114 IPR036955 GO:0003700|GO:0006355
Bisa08g2350 364 PRINTS Ethylene responsive element binding protein signature 94 114 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 PRINTS Ethylene responsive element binding protein signature 50 61 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 ProSiteProfiles AP2/ERF domain profile. 148 206 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 FunFam AP2-like ethylene-responsive transcription factor 147 208 - -
Bisa08g2350 364 Pfam AP2 domain 147 198 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 Pfam AP2 domain 48 104 IPR001471 GO:0003700|GO:0006355
Bisa08g2350 364 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 19 234 - -
Bisa08g2350 364 MobiDBLite consensus disorder prediction 1 55 - -
Bisa08g2350 364 SUPERFAMILY DNA-binding domain 48 114 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2350 Bisa-ChrBisa08 55877594 55882723 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2350 45 248 AP2-EREBP Transcription Factor Family AT5G57390 60.280 2.28e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Bisa08g2350 AP2 4.3e-07 CL0081