Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2313 ATGCGTGACGAAATCATGGATGTCTCGGTGGAATGGATTCTCTGCAGGAGAGAGCCTATTGGTTTTGGAGCGTTCGTTGAAACGAGAGACAGAGAGAGCAGTAGGGCAAGAAAAAGTACGAGCCTCAACCAGAAGCAGCAAAGAAGTAGAACTGTTGAACTGTTACTCATGGCTGAACCAGAAGACAACCAGCACGTTTCCCATGAGGATGGAACTAAGAAGAAGAAGAGGAAAAGGAGTAGACCACGGAAATCTGCATCTGAGGAGCAAGCAGAACCTCAAGAGACAAATCAGCATGTGAATGAAGAAGGTGAGGAAGCAGCGGAGAATGGCGATGTGGATAAGGAAACTGCGGAGGAGATGAGTAAGATAAAGAAGAAGAAGAAGAAGAAGGATAAGAAGGTGAAGAGTGGTGAGAAAGAGAGTGAAGGGGACAAGGACGGCAATGAAAATGATGAGGAGGAGGAGAAGGAACAGAGAAAGTTGAAGAATGTTGGGTCTGGAATTATGAGCACTGAGTCGTTTGATTCTCTGGGATTGTCTGAACCTACTTTTAAGGCCATTAAAGATATGGGATTCGAGCATATGACTCAGATTCAAGCGAGAGCAATTCCACCACTTTTGATTGGAAAAGATGTTCTTGGTGCTGCGAGAACAGGCTCTGGAAAAACTCTTGCTTTTTTAGTACCAGCTATAGAGCTGCTGTACAATGTTCAATTCACTCCTCGAAATGGAACTGGTGTTGTGGTCATCTGCCCTACAAGGGAGCTCGCAATACAGACACATGCTGTAGCAAAAGAACTTCTCAAGTATCACTCCAAAACTCTTGGATTGGTTATTGGAGGTTCTGCTAGAAAAGGTGAAGCTGAACGAATTGTTAAGGGGGTTAATCTACTGGTGGCAACTCCTGGTCGTCTTCTTGATCATCTACAAAATACCAAGGGATTCATATATAAAAACTTGAAGTGCCTCATGATTGATGAAGCTGACAGGATATTGGAAGCAAACTTTGAGGAGGAGATGAAGCAGATTATTAAAATCTTACCAAAGAATAGGCAAACGGCTTTGTTTTCAGCTACTCAAACCAAGAAGGTCGAGGATCTTGCCCGGTTGTCGTTTCAGACAACACCTGTCTATATTGATGTAGACGATGGGAGAACCAAGGTCACCAACGAAGGATTGCAGCAAGGCTATGTTGTTGTTCCTTGTTCCAAGCGATTTGTTGTTCTCTATTCCTTCTTGAAGAGATATCACTCAAAAAAAGTGATGGTCTTTTTCTCTTCATGCAACTCTGTGAAATTCCATGCAGACCTTCTCAATTACATTCAGGTTGATTGCTATAATATACATGGCAAACAAAAGCAGCAGACACGGACTACTACCTTCTTTGACTTCTGCAAAGCAGAAAAGGGAATTTTGCTCTGTACTGATGTTGCTGCCCGTGGACTTGATATACCTGCTGTGGACTGGATTGTGCAGTATGATCCTCCTGATGAACCCAAGGAATATATCCATAGGGTTGGTCGAACAGCTCGTGGGGAGGGTGGCAAAGGAAATGCTTTGCTTTTCCTGATTCCTGAAGAGTTGCAATTTCTTCGCTATCTGAAGGCGGCAAAGGTTCCTGTGAAAGAGTATGCTTATGATGAAAAGAAGCTGGCAAATGTACAGTCTCACCTGGAGAAGTTGGTTGCTAACAATTATTATTTGAATAAGGCAGCCAAAGATGCTTACAGGTCATATATACTTGCATATAACTCACACTCTATGAAGGACATATTTAATGTTCATCGCCTTGATTTACAGGCTGTTGCTGCTTCGTTCTGTTTTTCAAATCCCCCAAAGGTGAGTTTAGGCATAGATAGCAGTGCTTCAAAGCATAGAAAGAAAATGCGTAAGGTTGAAGGAAGCAGACATGGATTCAGCGACGGAAATCCTTATGGGAAGAGAAATGCGGATGACACGCGGCAATTCGTGAGGCATTAG 1983 0.4312 MRDEIMDVSVEWILCRREPIGFGAFVETRDRESSRARKSTSLNQKQQRSRTVELLLMAEPEDNQHVSHEDGTKKKKRKRSRPRKSASEEQAEPQETNQHVNEEGEEAAENGDVDKETAEEMSKIKKKKKKKDKKVKSGEKESEGDKDGNENDEEEEKEQRKLKNVGSGIMSTESFDSLGLSEPTFKAIKDMGFEHMTQIQARAIPPLLIGKDVLGAARTGSGKTLAFLVPAIELLYNVQFTPRNGTGVVVICPTRELAIQTHAVAKELLKYHSKTLGLVIGGSARKGEAERIVKGVNLLVATPGRLLDHLQNTKGFIYKNLKCLMIDEADRILEANFEEEMKQIIKILPKNRQTALFSATQTKKVEDLARLSFQTTPVYIDVDDGRTKVTNEGLQQGYVVVPCSKRFVVLYSFLKRYHSKKVMVFFSSCNSVKFHADLLNYIQVDCYNIHGKQKQQTRTTTFFDFCKAEKGILLCTDVAARGLDIPAVDWIVQYDPPDEPKEYIHRVGRTARGEGGKGNALLFLIPEELQFLRYLKAAKVPVKEYAYDEKKLANVQSHLEKLVANNYYLNKAAKDAYRSYILAYNSHSMKDIFNVHRLDLQAVAASFCFSNPPKVSLGIDSSASKHRKKMRKVEGSRHGFSDGNPYGKRNADDTRQFVRH 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2313 660 Pfam DEAD/DEAH box helicase 197 368 IPR011545 GO:0003676|GO:0005524
Bisa08g2313 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 319 528 IPR027417 -
Bisa08g2313 660 Pfam Helicase conserved C-terminal domain 409 513 IPR001650 -
Bisa08g2313 660 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 170 382 IPR027417 -
Bisa08g2313 660 FunFam RNA helicase 390 620 - -
Bisa08g2313 660 CDD DEADc_DDX18 184 381 IPR044773 GO:0003724|GO:0005524
Bisa08g2313 660 SMART DUF4217_3 554 617 IPR025313 -
Bisa08g2313 660 CDD SF2_C_DEAD 394 524 - -
Bisa08g2313 660 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 173 201 IPR014014 GO:0003724
Bisa08g2313 660 MobiDBLite consensus disorder prediction 29 168 - -
Bisa08g2313 660 SMART helicmild6 433 514 IPR001650 -
Bisa08g2313 660 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 325 333 IPR000629 -
Bisa08g2313 660 Gene3D - 114 383 IPR027417 -
Bisa08g2313 660 Pfam Domain of unknown function (DUF4217) 555 615 IPR025313 -
Bisa08g2313 660 Gene3D - 390 632 IPR027417 -
Bisa08g2313 660 MobiDBLite consensus disorder prediction 620 660 - -
Bisa08g2313 660 MobiDBLite consensus disorder prediction 83 106 - -
Bisa08g2313 660 PANTHER RNA HELICASE 127 560 - -
Bisa08g2313 660 SMART ultradead3 192 397 IPR014001 -
Bisa08g2313 660 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 409 553 IPR001650 -
Bisa08g2313 660 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 379 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2313 Bisa-ChrBisa08 54915313 54923851 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2313 173 532 Eukaryotic Initiation Factors Gene Family AT3G13920 32.143 1.01e-46 169