Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2290 ATGAGCTGGCGAAGAGTATTGAAGTCTGTACAGGCCCTCGCTGCCCATACCCTTCTCTTATCCTTCACTCTTCTGCTCGTCCTCAAGCTCGATCATGTAGTCTCCTGCTCCTGGTGGGTAATATTTTTCCCACTATGGATGTTTCATGCAGTTGTAGCTCGAGGAAGGTTCTCATTACCTGCACCATCAGTTCCACGTAATCGACATTGGGCACCGTGCCATGCCGTTGTTGCAATACCATTGCTTGTTGCATTTGAGTTGCTCCTTTGTATATATCTTGAGAGCGTATATGTTCATGGTTTTGAAGCTGTCAATCTGAAGATTGTGTTCCTTCCCTTACTAACATTTGAAATCATTATTCTAATTGACAATTTCAGAATGTGTAGGGCTCTAATGCCAGGGGATGAAGAAAACATGAGTGATGAGGCAATCTGGGAAACTCTCCCTCACTTTTGGGTTGCAATCTCTATGGTCTTCTTTGTTGCAGCTACAGTCTTCACACTCTTAAAACTCTCTGGTGATGTAGGTGCACTTGGCTGGTGGGACTTGTTTATTAACTTTGGTATTGCCGAGTGCTTTGCCTTCCTTGTATGTACAAAGTGGTCTAATCCAGTCATTCATAGAAATTCTCGACCAAGAGAAGCCAGTTCATCTTCTAGTACAATTAGATATCTTGACTGGAATAGTGGTTTAGTAGTTTCTTCAGAGGAAAATCAACATCAGGATAGAATGTGTGGCCTGCCAGACATAGGAGGTCATTTCATGAAAGTTCCTGTTATTGTATTCCAGATTCTTCTTTGTATGCGTTTAGAGGGAACACCTGCTAGTGCTAGAGATATACCACTTCCAGTTCTTTTCTCTCCTCTTTTCCTACTGCAAGGTGCTGGTGTACTATTTGCTGCATCTAAGTTGGTGGAGAAACTTGTACTTCTGCTTCGTAGTGGAGCTGGTGGAGGAATATATTTCAGATGTTCTTCAGGGGTTCATGATTGCTTGGGGTTCTTGCACCATGGTTCTAGGTTGTTGGGTTGGTGGTCAATTGATGAAGGGAGTCGAGAGGAACAGGCAAGATTGTTCCAAGAGGGAGCATCTGGGTATAACACTTTCAGTGGTTATCCTCCTGAGATTGTTAAGAAAATGCCCAAAAAGGATCTTGCTGAGGAGGTCTGGAGACTCCAGGCGGCTCTTGGTGAGCAGACAGAAATTACAAAATACAGCCAACAGGAGTTTGAAAGACTGCAGAATGAGAAAGTGTTATGCAGAATTTGTTTTGAGGGAGAGATTAGCGTTGTATTGCTACCATGCAGGCATCGTATCCTCTGCAGCACTTGCTCCTTGAAATGTAAGAAGTGCCCAGTTTGTCGTGTCTGTATCGAGGAGTGCCTACCTGTATATGATGTTTAG 1404 0.4359 MSWRRVLKSVQALAAHTLLLSFTLLLVLKLDHVVSCSWWVIFFPLWMFHAVVARGRFSLPAPSVPRNRHWAPCHAVVAIPLLVAFELLLCIYLESVYVHGFEAVNLKIVFLPLLTFEIIILIDNFRMCRALMPGDEENMSDEAIWETLPHFWVAISMVFFVAATVFTLLKLSGDVGALGWWDLFINFGIAECFAFLVCTKWSNPVIHRNSRPREASSSSSTIRYLDWNSGLVVSSEENQHQDRMCGLPDIGGHFMKVPVIVFQILLCMRLEGTPASARDIPLPVLFSPLFLLQGAGVLFAASKLVEKLVLLLRSGAGGGIYFRCSSGVHDCLGFLHHGSRLLGWWSIDEGSREEQARLFQEGASGYNTFSGYPPEIVKKMPKKDLAEEVWRLQAALGEQTEITKYSQQEFERLQNEKVLCRICFEGEISVVLLPCRHRILCSTCSLKCKKCPVCRVCIEECLPVYDV 467
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2290 467 ProSiteProfiles Zinc finger RING-type profile. 420 455 IPR001841 -
Bisa08g2290 467 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 395 465 IPR013083 -
Bisa08g2290 467 SUPERFAMILY RING/U-box 411 461 - -
Bisa08g2290 467 PANTHER TRANSMEMBRANE FRAGILE-X-F-ASSOCIATED PROTEIN 1 467 - -
Bisa08g2290 467 Pfam Zinc finger, C3HC4 type (RING finger) 417 460 - -
Bisa08g2290 467 Pfam Transmembrane Fragile-X-F protein 28 292 IPR019396 -
Bisa08g2290 467 SMART ring_2 420 454 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2290 Bisa-ChrBisa08 54493904 54505248 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2290 1 467 C3H Transcription Factor Family AT1G73950 72.805 0.0 685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2290 08 54493904 54505248 Bisa08g2290 08 54493904 54505248 ECH