Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2266 ATGATATTTCAGGTGCGTCGTGCGCACCAGGCTTTTCAGGGGGATTGTGGTAGGGTTTTCAAAGCTCCCTGGATCGTAAAGAATTCGTCAATGAAACGGGAAGTGCAGCTAGAGCCGCCAGTTGCGCAAAACCTTGGTGATTCCGACCCTTTACTCGATAACCAGGAGGAGGAGAAAGAGGAGGAGTCTCCGGGAAGCACAAGTGAGATTAAGGATGAGGATGTCGAGGCTGGCTTAGTTCCTACTTGTCGAATTTGCCTGGAGAGCGATTCCGACCCAGATGATGAATTGATATCACCATGCATGTGCAAGGGGACCCAACAATTTGTCCATCGTTCATGTCTTGATCACTGGCGCTCAGTAAAGGAAGGGTTTGCCTTCTCACACTGCACCACTTGCAAAGCCCAATTTCATCTCCGAGTTGAATTATTTGAGGACAACTCTTGGCGTAAAATAAAGTTCAGACTGTTTGTGGCAAGGGATGTTTTTCTTGTATTTTTGGCTGTACAAACTGTGATTGCTGCAATTGGCGGTTTTGCATACCTCATGGACAGAGATGGGGCCTTCAGGAACTCCTTCAATGATGGTTGGGATCGGATACTGTCAAACCATCCGATACCTTTTTATTATTCTATTGGAGTACTGGCCTTCTTTGTGCTGCTTGGATTTTTCGGTCTCATACTACATTGCTCCTCCCTCAATAGCAATGACCCAAGAATGGCCGGTTGTCAGAACTGTTGTTATGGATGGGGCATCTTGGATTGCTTTCCGGCATCCATGGAGGCATGCTTTGCCCTTGTGGTTGTTTTTGTCATTATCTTTGCAATTCTGGGTATAGCTTATAGTTTCCTTGCGGCCACAATGGCGATTCAAAGAATCTGGCAAAGACACTACCACATCCTCACCAAGAGGGAGCTGACAAAGGAATACATAGTGGAGGATCTCCATGGTTCATATTTCCCACCAAAATTGGACCCAGAACATGAAGAGCGCTTGAAAATGCTTAAGCTTTTGTGA 1017 0.4612 MIFQVRRAHQAFQGDCGRVFKAPWIVKNSSMKREVQLEPPVAQNLGDSDPLLDNQEEEKEEESPGSTSEIKDEDVEAGLVPTCRICLESDSDPDDELISPCMCKGTQQFVHRSCLDHWRSVKEGFAFSHCTTCKAQFHLRVELFEDNSWRKIKFRLFVARDVFLVFLAVQTVIAAIGGFAYLMDRDGAFRNSFNDGWDRILSNHPIPFYYSIGVLAFFVLLGFFGLILHCSSLNSNDPRMAGCQNCCYGWGILDCFPASMEACFALVVVFVIIFAILGIAYSFLAATMAIQRIWQRHYHILTKRELTKEYIVEDLHGSYFPPKLDPEHEERLKMLKLL 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2266 338 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 147 IPR013083 -
Bisa08g2266 338 SMART ringv_2 82 134 IPR011016 GO:0008270
Bisa08g2266 338 PANTHER RING/FYVE/PHD ZINC FINGER SUPERFAMILY PROTEIN 45 338 - -
Bisa08g2266 338 Pfam RING-variant domain 83 133 IPR011016 GO:0008270
Bisa08g2266 338 ProSiteProfiles Zinc finger RING-CH-type profile. 75 140 IPR011016 GO:0008270
Bisa08g2266 338 MobiDBLite consensus disorder prediction 37 71 - -
Bisa08g2266 338 CDD RING_CH-C4HC3_MARCH 83 134 - -
Bisa08g2266 338 SUPERFAMILY RING/U-box 81 138 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2266 Bisa-ChrBisa08 53953316 53956445 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2266 31 338 C3H Transcription Factor Family AT1G11020 77.812 5.45e-169 471
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g2266 08 53953316 53956445 Bisa08g2266 08 53953316 53956445 ECH