Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2202 ATGAAAGTTCGATCAGTAAAGCTGAGGGAAGCCCACAAGGCCGCCAGCAATGGCCGCCCTTCTTTCTGCTCCATCTTGTGGGACCAACAAGCTCAACACCTCGTCACGGCATGCTCTTCTGATGTCTCCATCTCAATTCATGACCCTCTCCTTCCTTCAACACCCCCGCAGATCCTCACCCATCATCGCGATGGTGTTACTGCTTTGGCTCTTAGCCCCAACTCTACATGTCTTGCATCCGGATCAGTCGATCACTCCGTCAAGCTCTACAAGTTCCCGGGTGGAGAGTTCCAGACTAATATTACCAGGTTTACCCTTCCAATACGTTCTCTAGCATTTAATAAATCAGGGAGTATGTTAGCAGCCGCTGGTGATGATGAAGGAATTAAACTTATTAATACCGTTGATGGTTCTATTGCAAGGGTTCTCAAAGGACATAAAGGGACTGTTACGGGCTTAGCTTTTGATCCCAATGGTGAATACTTGGCATCTATGGATTCCACTGGAACTGTTATTTATTGGGAACTTCACTCAGGAAGAATAGTTCATAACCTTAAAGGCATTGCTCCTGATATCAGAGCAGATGTTTCTACTATGAATGTTCTTTGCTGGAGTCCTGATGGTGAGACCCTGGCTGTTCCGGGATTGAGAAATGATGTTGTAATCTATGATAGAGACACTGCTGAAAAGTTGTTTTCATTGAGAGGGAATCACATACAACCTATATGTTACTTGTCTTGGTCACCCAATGGCAAGTACATGGCCACTTCAGGCTTAGACAGGCAGGTTTTTATATGGGATGTTAGTAAAAAGCAGGATATTGATAGGCAAAAGTTCAATGAAAGAATATGTTGCATGGCTTGGAAGCCAATCGGTAATGCCTTAGCTGTTATTGATGTCATGGGGAAGTATGGTATTTGGGAGTCTGTAATTCCTTCATCTATGAAATCCCCAACAGAGGATATTCCTATGCAATCTAAGAACAGTAATGGCCTTCTTTTGTTTGATGAGGAGGATCCAGACCTTTGTGCACATGAAAGTTTAAGTGATCTGGGTGAAGATAGCAATGGAAAGTCTGAACCACCTAGCAGGAAAAGATTACACAAACAGTGTTTCAGTGAGGACAACTTTGATGATGACAGCAGTGATGAAATGACTTTATATCCAAAGGTTGAATCTCATAAAAAACCAAATTGCACGCACAAAGAAAATTTGGATAGCGTGCATGTGGGACTTAAAAGCTCGATGATGACATGTAAGCCAAAGATGCAGGAAGCGTTTCAGCCAGGATCCACTCCTGTGCAGCCTGGGAAAAGGCGCTTTTTGTGCTATAATATGCTTGGAAGTATAACCACCATTGAACATGATGGATACTCCCATGTAGAGATTGATTTTCATGATACTGGCAGCAGTCCACGAGTTCCATCGATGACTGACCATTTTGGATTTACAATGGCTGCCTTAAATGAGATTGGGAGCGTCTTTGCAAATCCTTGCAAGGGGGAGAAGAACATGAGCACTCTCATGTATCGTCCATTTAGTAGTTGGGCAAGTAATAGTGAGTGGTCTATGCGCTTTGAAGGAGAAGAAGTAAAGGCTGTGGCAATTGGTGCTGCTTGGGTGGCTGCAGTAACTAGTTTTAACTATCTTCGCATCTTTACTGTTGGTGGTTTGCAGAGACATATTATTTCGCTGGATGGGCCAGTGGTGACTGCATCAGGTTTCAAGGACAAGCTGGCAGTTGTTACTCATGCCTCTGATTGTGTTTCCTCGAATGATCAGATGCTAGAGTTTAGAGTATTTGATATATCTAATCAAACCCAGCCCCTTAAAGGCCGCTTGCCATTAACTCCTGGTTCATATCTAATGTGGTTTGGATTTAGTGAAGAAGGGCATTTGAGTTCCTATGATTCCAAGGGTGTGCTCAGAGTGTTTACAAGCCAATATGGTGGTAGCTGGCTCCCATTCTTCAGTGCCAGTAAAGAGAAAGATGAAAACTATTGGGTGGTGGGGTTGAATGCAAGCAATTTATTTTGTGTGATATGTAGGAAACCTGACATCGTCCCACAGGTGACGCCTAAACCAGTTATGACTCTACTGAATCTTTCATTTCCTCTTGCTTCTTCTGATCTGGGATCTGAAGCCCTTGAAAATGAGTTCATAATGAACACCATGCATCTCTTTGAGATTCAGAAAAGAATGGATGAAATGGCTATTGCTGGTTTGGACACCAGCTTACTTGATGACGAGGCTTTCAATCTGGAAGCAGCACAAGATAGATGCATTCTTAGGCTTATAGCATCGTGCTGCAATGGAGATAAGCTAGTGAGAGCCGATGAACTTGTGAAGCTTTTGTCACTGGAAAAATCGATGAAAGGTGCAATAAAACTAGTTACTGCTCTGAAACTTCCCAACTTGGCTGAAAGGTTCAGTAGCATATTAGAGGAAAGGCTACTCCGTGAAACAAAAAAATCTACAGATACCAACATCCAAGAAAACCGTACTGCTCCGATCATAGCTGACATTTCACTTAACAGAAACAAGGCCCTAAATCATACTGAAGCATCGGCCACAGTTAGTATGTCACCATCTCCAGCATTATCTGCTCCTTTATTCACAAAGAAAGCCAAATCGCAAGAGGAAGCTAAAGCTGGAATAGATAAAACTGCGGCGGTGAATGAAACTGTGAAGGCAAAGAACAAAGGGAATGATGCAAGTGATAGGGAGGGGAAGGCTGGTGAAATACGCCAAGTCCAAGCTCATCACCCACAAGATCCCTCTATAAAGTCATCAAACAAGCAGAAAGTGAAGAAGTTAGAGGCAAGTATGGCACAACCAAGTCGGCCTTCCAATCCATTTTTGAAGTCATCTATCAAAACGAAGGCCAAAGAACGAAGGTCCCTTGCAGCTTACGGAGATTATTTTGTGTCATTTACTCAACCACTTATTTACCACCATATTTCCTTTACCAACATACTTCAGAAGCTTTCCATAACGTCATCAATGGCTGATGTTACCTACCTTCGCCTCCACGAACCAGATGACGATCCTCGCCTTCCCGAGCAAACCCTAACACTTGATTCGTTCCCCTACTGGTCCCATAACGATTTTGATTTCTATGCTTCCGATCCAGAATTCCCACCGGCTGACCACTCCCGCCGCGCGCCTCACACGGCCTCTCATGATGGTGTCTTGTCTCAACAATTTGAATCCACTGTCTCCATACGAGCCGATGACGACTTCTCGGACCGTGGTTCGATCCCCGGCACCGATCTATTGGACCGCGAAAACCAGGTAAATTTCGTTATGGATCTATTTCAACAACGTGTTGAGCAATCGCATGTCATGGGACATAGCGATTTGGTCTCCGAGGTGACTAATGATTCGACTTTCGGTATGATTGATGGACACTGTGATGTGGGTGTTGATGGTTTGGGTCTGGATTTGGGATTGGGATTAGGGTTTGGTGTCGACACGGACTCTTTGCACGGGGATGACAATAGTGGGTTTATGATTGAAAACTATGGTTCTGGTGGTGGTAACGATTTCTTCATTGGAAGGAGGGTTTCTGGATCTGATGCCGCGGGGACACCGTCTACGGCAAACCGGGTTCGGCCTTTTGAGAATTCTGTCCGGCTTGTGGGGTTTGGGTCAGATTCTGATGAGGAGGAGAATGGGGTTCTGGGTATGTGTGTGCACTCAGAAGATGAGTTTAATTTGCATGACGAGAATGACGATGTGGCAAGCATCCCTCTCTGTTGGGATGCACTTCAAATGGAGGAAAACAGGGATAATAACGAAGATTTTGAGTGGGAGGAAGTGGATGGCCGGGTTGACGAGAGGGAAGTTTTGAGCATGTTCACGGTTGAGGATGATAGGTCGGTATCAGTTTCAGTCTCACCGATAAATGGGCTTGATGAAGAAGTAAGCACTGTAAGGGTGGGAGGTATGGAAAATTTGGAGTGGGAAGTGTTGTTGAATGCCAATAATTTGGACACAAACCCTGATTTGGATCACGATGCAGAGCCTTACTTTGGTGATCATGACGACTATATTTATACTGCAGAGTATGAAATGATGTTTGGCCAATTTGCTGAGAATGAGAATCCCTTAGCAGGTCGGCCTCCAGCTTCTGTATCTGTTGTTCGGGATCTTCCATCAGTGGTTGTGACCAAAGATAATGTGGAGAACAATGATGCACTCTGCGCAGTTTGTAAGGATGAGTTTAGTGTTGAGGAACAAGTGAAACAGTTGCCATGTTCTCATCGCTACCATGGTGAATGCATTATACCATGGTTGGGAATTCGGAACACTTGCCCTGTCTGTCGATATGAGTTTCCCACCGATGATGCTGATTATGAGCGTTGGAGGATACAAAGATCTGGCCGTAACTTTTGA 4398 0.4436 MKVRSVKLREAHKAASNGRPSFCSILWDQQAQHLVTACSSDVSISIHDPLLPSTPPQILTHHRDGVTALALSPNSTCLASGSVDHSVKLYKFPGGEFQTNITRFTLPIRSLAFNKSGSMLAAAGDDEGIKLINTVDGSIARVLKGHKGTVTGLAFDPNGEYLASMDSTGTVIYWELHSGRIVHNLKGIAPDIRADVSTMNVLCWSPDGETLAVPGLRNDVVIYDRDTAEKLFSLRGNHIQPICYLSWSPNGKYMATSGLDRQVFIWDVSKKQDIDRQKFNERICCMAWKPIGNALAVIDVMGKYGIWESVIPSSMKSPTEDIPMQSKNSNGLLLFDEEDPDLCAHESLSDLGEDSNGKSEPPSRKRLHKQCFSEDNFDDDSSDEMTLYPKVESHKKPNCTHKENLDSVHVGLKSSMMTCKPKMQEAFQPGSTPVQPGKRRFLCYNMLGSITTIEHDGYSHVEIDFHDTGSSPRVPSMTDHFGFTMAALNEIGSVFANPCKGEKNMSTLMYRPFSSWASNSEWSMRFEGEEVKAVAIGAAWVAAVTSFNYLRIFTVGGLQRHIISLDGPVVTASGFKDKLAVVTHASDCVSSNDQMLEFRVFDISNQTQPLKGRLPLTPGSYLMWFGFSEEGHLSSYDSKGVLRVFTSQYGGSWLPFFSASKEKDENYWVVGLNASNLFCVICRKPDIVPQVTPKPVMTLLNLSFPLASSDLGSEALENEFIMNTMHLFEIQKRMDEMAIAGLDTSLLDDEAFNLEAAQDRCILRLIASCCNGDKLVRADELVKLLSLEKSMKGAIKLVTALKLPNLAERFSSILEERLLRETKKSTDTNIQENRTAPIIADISLNRNKALNHTEASATVSMSPSPALSAPLFTKKAKSQEEAKAGIDKTAAVNETVKAKNKGNDASDREGKAGEIRQVQAHHPQDPSIKSSNKQKVKKLEASMAQPSRPSNPFLKSSIKTKAKERRSLAAYGDYFVSFTQPLIYHHISFTNILQKLSITSSMADVTYLRLHEPDDDPRLPEQTLTLDSFPYWSHNDFDFYASDPEFPPADHSRRAPHTASHDGVLSQQFESTVSIRADDDFSDRGSIPGTDLLDRENQVNFVMDLFQQRVEQSHVMGHSDLVSEVTNDSTFGMIDGHCDVGVDGLGLDLGLGLGFGVDTDSLHGDDNSGFMIENYGSGGGNDFFIGRRVSGSDAAGTPSTANRVRPFENSVRLVGFGSDSDEEENGVLGMCVHSEDEFNLHDENDDVASIPLCWDALQMEENRDNNEDFEWEEVDGRVDEREVLSMFTVEDDRSVSVSVSPINGLDEEVSTVRVGGMENLEWEVLLNANNLDTNPDLDHDAEPYFGDHDDYIYTAEYEMMFGQFAENENPLAGRPPASVSVVRDLPSVVVTKDNVENNDALCAVCKDEFSVEEQVKQLPCSHRYHGECIIPWLGIRNTCPVCRYEFPTDDADYERWRIQRSGRNF 1465
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2202 1465 MobiDBLite consensus disorder prediction 918 954 - -
Bisa08g2202 1465 Gene3D - 192 309 IPR015943 GO:0005515
Bisa08g2202 1465 ProSiteProfiles Trp-Asp (WD) repeats profile. 143 184 IPR001680 GO:0005515
Bisa08g2202 1465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 59 91 - -
Bisa08g2202 1465 MobiDBLite consensus disorder prediction 346 376 - -
Bisa08g2202 1465 SUPERFAMILY WD40 repeat-like 23 308 IPR036322 GO:0005515
Bisa08g2202 1465 SMART WD40_4 178 224 IPR001680 GO:0005515
Bisa08g2202 1465 SMART WD40_4 227 267 IPR001680 GO:0005515
Bisa08g2202 1465 SMART WD40_4 52 91 IPR001680 GO:0005515
Bisa08g2202 1465 SMART WD40_4 2 48 IPR001680 GO:0005515
Bisa08g2202 1465 SMART WD40_4 136 175 IPR001680 GO:0005515
Bisa08g2202 1465 SMART WD40_4 94 133 IPR001680 GO:0005515
Bisa08g2202 1465 SUPERFAMILY RING/U-box 1389 1449 - -
Bisa08g2202 1465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 235 269 - -
Bisa08g2202 1465 Pfam Minichromosome loss protein, Mcl1, middle region 426 706 IPR022100 -
Bisa08g2202 1465 MobiDBLite consensus disorder prediction 1043 1065 - -
Bisa08g2202 1465 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1363 1449 IPR013083 -
Bisa08g2202 1465 Pfam Ring finger domain 1402 1443 IPR001841 -
Bisa08g2202 1465 SMART ring_2 1402 1442 IPR001841 -
Bisa08g2202 1465 FunFam E3 ubiquitin-protein ligase RING1-like 1363 1449 - -
Bisa08g2202 1465 CDD WD40 27 297 - -
Bisa08g2202 1465 ProSitePatterns Trp-Asp (WD) repeats signature. 254 268 IPR019775 -
Bisa08g2202 1465 Gene3D - 2 191 IPR015943 GO:0005515
Bisa08g2202 1465 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 143 180 - -
Bisa08g2202 1465 MobiDBLite consensus disorder prediction 346 383 - -
Bisa08g2202 1465 ProSiteProfiles Trp-Asp (WD) repeats profile. 59 100 IPR001680 GO:0005515
Bisa08g2202 1465 PANTHER WD REPEAT AND HMG-BOX DNA BINDING PROTEIN 1 966 - -
Bisa08g2202 1465 Pfam WD domain, G-beta repeat 230 267 IPR001680 GO:0005515
Bisa08g2202 1465 Pfam WD domain, G-beta repeat 141 167 IPR001680 GO:0005515
Bisa08g2202 1465 Pfam WD domain, G-beta repeat 57 90 IPR001680 GO:0005515
Bisa08g2202 1465 ProSiteProfiles Zinc finger RING-type profile. 1402 1443 IPR001841 -
Bisa08g2202 1465 FunFam Transducin family protein / WD-40 repeat family protein 196 323 - -
Bisa08g2202 1465 ProSiteProfiles Trp-Asp (WD) repeats profile. 235 276 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2202 Bisa-ChrBisa08 52318191 52331820 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2202 1248 1449 C3H Transcription Factor Family AT5G60820 48.598 1.41e-51 186