Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2180 ATGGAAAACCTGGAGATCAACTCATCAGAATGCCCTCTCCTATCTCAAAGCACGTACAAAAACCATAGGATGATGAAGGTTTCAGAAAAATCAGAGTTGGTGATGAAGGAGAGAAAGTACCTTGGGGTGAGAAAAAGGCCTTCAGGAAGATGGGTGGCTGAGATCAAAGACTCTTCACAGAAGCTAAGGCTCTGGTTAGGGACTTTTGACAGAGCAGAAGATGCAGCGATGGCTTATGATTCTGCTGCTAGGCTTCTGAGAGGAAGAAACGCCAAGACCAACTTTCAAAGCTCCTCAGGGATGATCACCAACACACACGAGGAAAATTGTAGCCTTCTGGGGAAGAATCCAAGGGCTTACCAGATTCTTAAGCATGCAATCATGAAGAAACACCATGCAGTTTCTTCCAGAATTGTTATGCCTTGGAGGAACCAGATCAGTCATGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAAAGGAAGAAGCATCATGCTGCTTAGGTGGGGTTTCATTTGGGACTACTTGTAAGGTTTATTCTTCTGTTGTTGTGGCTCCTTCTTTCAGTGCTTCGTTTTATCAAACACAGAACGCTCATCAAGAAACCCCACAAGAAGCCTTTGTAGTATCTCACAGTACTACATGA 660 0.4333 MENLEINSSECPLLSQSTYKNHRMMKVSEKSELVMKERKYLGVRKRPSGRWVAEIKDSSQKLRLWLGTFDRAEDAAMAYDSAARLLRGRNAKTNFQSSSGMITNTHEENCSLLGKNPRAYQILKHAIMKKHHAVSSRIVMPWRNQISHEEEEEEEEEEEEEEEEKEEASCCLGGVSFGTTCKVYSSVVVAPSFSASFYQTQNAHQETPQEAFVVSHSTT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2180 219 Gene3D AP2/ERF domain 38 97 IPR036955 GO:0003700|GO:0006355
Bisa08g2180 219 PRINTS Ethylene responsive element binding protein signature 40 51 IPR001471 GO:0003700|GO:0006355
Bisa08g2180 219 PRINTS Ethylene responsive element binding protein signature 62 78 IPR001471 GO:0003700|GO:0006355
Bisa08g2180 219 Pfam AP2 domain 39 88 IPR001471 GO:0003700|GO:0006355
Bisa08g2180 219 MobiDBLite consensus disorder prediction 144 169 - -
Bisa08g2180 219 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 36 150 - -
Bisa08g2180 219 SMART rav1_2 39 102 IPR001471 GO:0003700|GO:0006355
Bisa08g2180 219 MobiDBLite consensus disorder prediction 149 167 - -
Bisa08g2180 219 ProSiteProfiles AP2/ERF domain profile. 39 96 IPR001471 GO:0003700|GO:0006355
Bisa08g2180 219 FunFam ethylene-responsive transcription factor RAP2-11 38 97 - -
Bisa08g2180 219 SUPERFAMILY DNA-binding domain 39 97 IPR016177 GO:0003677
Bisa08g2180 219 Coils Coil 143 171 - -
Bisa08g2180 219 CDD AP2 39 98 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2180 Bisa-ChrBisa08 51853234 51853893 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2180 26 95 AP2-EREBP Transcription Factor Family AT5G19790 62.857 1.69e-24 95.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa08g2180 AP2 6.2e-11 CL0081