Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2166 ATGGTAGAGAAGAGAGTTAATAACATTTACAGGTTGGATGACTTGGATTCCAGACTTCCTTTATCTTCTGATGTTGGAGTTAAAAAAAGTGGATTTAGTATTGAGAAACTAAACCATGGTAGCCATACAAGCCCTGCAACCTCTAGGTCTTTCAAAAGAGGAATGAGAAAGGGATCTGAAGGACTGAAGTCAGTTGGCCGATCATTTGGATTTGGGGTATCTAGGGCAGTGTTTCCAGAAGATCTTAAAGTGTCAGAGAAGAAGATATTTGATCCTCAAGACAAATTTTTACTCCTGTGGAATAAACTTTTTGTTGTCTCGTGCATTTTGGCTGTGTCTGTGGATCCATTGTTTTTCTATCTCCCTGTCATCAATGATTCATTAAATTGCCTTGGTATAGACCGAAAGTTGGCAATCATAGTCACCACCTTGAGGACAGTTGTTGATGCTTTCTATCTTATACATATGGCTCTTCAATTTCGCACTGCTTATATTGCACCATCTTCTCGTGTCTTTGGACGGGGGGAACTTGTGATAGATTCAACACAAATAGCCAAGCGATATTTGCGGCGGTATTTCATTGTCGATTTTCTATCTGTCTTGCCCTTACCACAGATTGTGGTTTGGAAATTTCTTCAGAGATCAAAGGGCTCAGATGTATTGGCAACAAAGCAGGCCTTGCTGTTCATTATCTTACTTCAGTTTATTCCTAGATTTCTCCGGATGGTACCATTGACATCGGAACTTAAGAGAACAGCTGGTGTCTTTGCCGAAACTGCATGGGCTGGTGCTGCATCTTATTTGCTTTTATACATGCTTGCTAGTCATATAGTTGGGGCTTTTTGGTATTTGTTAGCTGTTGAACGCATTGACTCATGCTGGCAGGAGGCTTGTAATGAGGGGTGCAACAAAAATTTCTTGTATTGTGGTAACCAGCTAATGGATGGTTATAGTGCCTGGCAAAATAGAAGTGATGATATTCTTAAGGAAAATTGCTCTGCAGATGATAAGTCGCCTTTTGATTATGGGATTTTCAAACAAGCATTATCATCTAGCATTCTTTCATCTAAAAAGTTTGTGTCCAAATACTGTTACTGTTTATGGTGGGGGCTCCAGAATTTGAGTACACTTGGCCAAGGGCTCGAAACCAGCACTTACCCTGGGGAGGTTATCTTTTCAATAGCGCTAGCTATATTTGGGCTTATCCTGTTTGCACTTCTGATTGGTAACATGCAGACATATCTTCAATCCCTTACCATGAGGCTTGAAGAAATGAGAGTCAAAAGGCGTGATTCAGAGCAGTGGATGCACCATCGTTTGCTCCCGCAAGAGCTGAGAGAGCGGGTTAGACGTTATGATCAATATAAGTGGTTGGCAACACGTGGTGTGGATGAAGAAAGTTTGGTTCAGACATTACCTAAGGATCTTCGACGAGATATTAAGCGTCACCTCTGTCTGGCTTTGGTGCGGAAGGTTCCACTATTTGAGAGCATGGATGAAAGATTGCTTGATGCCATTTGTGAGAGGCTGAAACCTTGTCTATTTACAGAGAGTACTTATATTGTTCGGGAAGGAGATCCAGTTGACGAGATGCTTTTTATCATACGTGGTCGCCTTGAAAGTGTTACCACAGATGGTGGGAGGAGTGGGTTTTTTAACCGCAGTTTGCTCAAAGAAACTGACTTCTGTGGGGAGGAGCTTTTAACATGGGCACTGGATCCCAAATCTGGTTCTAACCTCCCAACTTCCACTCGTACAGTTAAGGCATTAACTGAGGTTGAGGCTTTTGCCTTAATTGCTGAAGAGTTAAAATTTGTTGCTAGTCAGTTTAGGCGTCTCCACAGTAGACAGGTTCAACACACTTTCCGCTTTTACTCACAGCAATGGAGGACTTGGGCTGCATGCTTTATCCAAGCCGCATGGCGTCGGTATTCTAAAAGGAAGGCTATGGAACATCGTCAAAAGGAAGAAGAACGTGAGGAGGTGCAAGGAACTCGCAACAATGTAAGTGGCGGTTCATACAGTATTGGTGCTACCTTCCTGGCTTCAAGGTTTGCGGCCAATGCTCTTCGGGGTGTACATCGCAATCGAAATGCTAAGACTGCAAGGGAGTTGATGAAACTACAGAAACCTCCAGAGCCTGACTTCACTAGAGATGATGCAGACTGA 2169 0.4283 MVEKRVNNIYRLDDLDSRLPLSSDVGVKKSGFSIEKLNHGSHTSPATSRSFKRGMRKGSEGLKSVGRSFGFGVSRAVFPEDLKVSEKKIFDPQDKFLLLWNKLFVVSCILAVSVDPLFFYLPVINDSLNCLGIDRKLAIIVTTLRTVVDAFYLIHMALQFRTAYIAPSSRVFGRGELVIDSTQIAKRYLRRYFIVDFLSVLPLPQIVVWKFLQRSKGSDVLATKQALLFIILLQFIPRFLRMVPLTSELKRTAGVFAETAWAGAASYLLLYMLASHIVGAFWYLLAVERIDSCWQEACNEGCNKNFLYCGNQLMDGYSAWQNRSDDILKENCSADDKSPFDYGIFKQALSSSILSSKKFVSKYCYCLWWGLQNLSTLGQGLETSTYPGEVIFSIALAIFGLILFALLIGNMQTYLQSLTMRLEEMRVKRRDSEQWMHHRLLPQELRERVRRYDQYKWLATRGVDEESLVQTLPKDLRRDIKRHLCLALVRKVPLFESMDERLLDAICERLKPCLFTESTYIVREGDPVDEMLFIIRGRLESVTTDGGRSGFFNRSLLKETDFCGEELLTWALDPKSGSNLPTSTRTVKALTEVEAFALIAEELKFVASQFRRLHSRQVQHTFRFYSQQWRTWAACFIQAAWRRYSKRKAMEHRQKEEEREEVQGTRNNVSGGSYSIGATFLASRFAANALRGVHRNRNAKTARELMKLQKPPEPDFTRDDAD 722
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2166 722 PRINTS EAG/ELK/ERG potassium channel family signature 156 165 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bisa08g2166 722 PRINTS EAG/ELK/ERG potassium channel family signature 457 464 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bisa08g2166 722 PRINTS EAG/ELK/ERG potassium channel family signature 363 380 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bisa08g2166 722 PRINTS EAG/ELK/ERG potassium channel family signature 273 283 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bisa08g2166 722 PRINTS EAG/ELK/ERG potassium channel family signature 407 416 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bisa08g2166 722 PRINTS EAG/ELK/ERG potassium channel family signature 389 400 IPR003938 GO:0005249|GO:0006813|GO:0016020
Bisa08g2166 722 SUPERFAMILY cAMP-binding domain-like 423 613 IPR018490 -
Bisa08g2166 722 Pfam Ion transport protein 99 421 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Bisa08g2166 722 FunFam Cyclic nucleotide-gated ion channel 1 421 485 - -
Bisa08g2166 722 SMART cnmp_10 494 625 IPR000595 -
Bisa08g2166 722 SUPERFAMILY Voltage-gated potassium channels 91 416 - -
Bisa08g2166 722 CDD CAP_ED 494 625 IPR000595 -
Bisa08g2166 722 Gene3D - 103 419 - -
Bisa08g2166 722 Gene3D Jelly Rolls 492 612 IPR014710 -
Bisa08g2166 722 ProSiteProfiles IQ motif profile. 630 659 IPR000048 GO:0005515
Bisa08g2166 722 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 81 716 - -
Bisa08g2166 722 Gene3D Helix hairpin bin 421 485 - -
Bisa08g2166 722 FunFam Cyclic nucleotide-gated ion channel 1 492 610 - -
Bisa08g2166 722 ProSiteProfiles cAMP/cGMP binding motif profile. 494 578 IPR000595 -
Bisa08g2166 722 MobiDBLite consensus disorder prediction 699 722 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2166 Bisa-ChrBisa08 51603034 51621632 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2166 18 719 Ion Channels AT5G57940 78.218 0.0 1132