Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2148 ATGTTCGATACGGTGGAGGAAGCAGCTCTGGTTTACGACAGAGAAGTGATTCGTCTCATAGGTCTCGATGCTCTGACGAATTTAATCAAACCACCTGGGAAATCAAAATCTCTTGTGCTGCCTTTGAGCGTATACCATGATTCGCGAGAATTTAAGAAAAGGCCTGTGATTGTGAAGAACGAGTGGTTAGAGAACAATTGTGTCTGCGATTCAAGTAAAGAGTCACGCGATGTGAAGATGGACGAAGATTTGCTGAAGCGAAACACCGATTGCGTCTATTTCTTGGCCTCCCCCCTCACTTGCAAGAAGGGGGCTGATTGTGAGTATCGGCATAATGAGATTGCAAGGTTAAACCCACGGGATTGCTGGTACTGGTTATCTGGGAACTGCCTTAATCCAACATGTGCTTTTAGACACCCTCCATTGGAGGGGCATACTGGAGTGCCAACTGAACCTACACAATCTTCTTTACCTGCGAACAAGACAACGGTTCCCTGTTTTTTTTTCGTCAATGGATTTTGCAATAAAGGTGATAGATGCTCATTTTTGCATGGCCCTGATTATATCTTATTTCCTAGTAAGCCTTTGAAAAATGACTCTGGAAGCAATGACACGCACACCCTAGAAAATAAAACATCAGCAGACAATAAAACAGGTGTAACATCAACCACTGAAGCATATCTTGATCCATCTGATGTTGCTCCAAGGGCTCTGCATAATTGTAAATTTCAGCCTACTGTAGATCTTCAGCAACCGGCACCAAAAAATGTTAAACAGCTAAATACTTCCCCTGGTATATCTGCTTATAAGTATAAAGAAGCCACTGTGATCAGGCCGGGCTCCCTACTTCCAGAAGAAGAATTTGTTCATAGCATTCCCTATATATGCACCGAACAGACTATGGAGGAGCAAGTAAACAGTCACATAGAACACGAGGAACGATGGGAATCATCTCCTGGATTTGATGTTCTTGTTGATGATGAAATGGAGAACTTAGGTTACGAGGATGATTCAGAATATTTAACCATGCTTGACAGGGAACATCAGGAATTGAATGGGCAATACATGCGGTATGAGTTTAAAGACACGGTTGAATATGATCCTATATGTCCAGAAGCTGACATTCTATATGAACAAGAGATGTATGATGTTTACAGATGTATGGACGGTGATCATACTTTTGCTGATGACAGAAAATTTCCTGCTTATTGCAGAGAGAGAATAATAGATTCTATATTGTCCAGAAAGAGGATTCGGGTGCCAGCTGAAATGACTGCTTGTGACAGGAACTTAGATCTACGAGACCATCTAAGGAGACGTAGGGAAATCAATGGTCAATCTGTTCCAGGCCTTTTAAGAAGACAGGAATCATCTTGCCTGATGATTCGGAACCAGGATAGGCATAGAAGACACGGTCCTGAACAAAGGCTAAGTAGAAGCCTGACATCAGAGGTGGGATTGAGCACAATAGACTCAAATGGAGTGGGTGAAACTCTTCCAATTAATAAGCATGGCATATTTAGGTATTCTCAGCAGCATACATCAAGGAAGCATTATAAAGAAAAACTAGCTAAACGGCAGTTTCTTTCATCTAAAATCCCCCGGAAACCAGTTTCAAAGCAAAGGAGATCAATTCACGAGTCTACTAACTCTGCATTTAACGGACCTAAGACTCTAGCAGAAATTAAAGAAGAGAAGAAGAAGGCTGCAGAGAGAGGGCATTTCAAAAGCGCTGCAGCTGACTTTCAGGATCCAAAACCTCTCAGTGAAATCCTCAAAGACAAGAGGAGGTCAGATGGTGTTCGAGATGACAATGCATGCAGTATCTGA 1830 0.4219 MFDTVEEAALVYDREVIRLIGLDALTNLIKPPGKSKSLVLPLSVYHDSREFKKRPVIVKNEWLENNCVCDSSKESRDVKMDEDLLKRNTDCVYFLASPLTCKKGADCEYRHNEIARLNPRDCWYWLSGNCLNPTCAFRHPPLEGHTGVPTEPTQSSLPANKTTVPCFFFVNGFCNKGDRCSFLHGPDYILFPSKPLKNDSGSNDTHTLENKTSADNKTGVTSTTEAYLDPSDVAPRALHNCKFQPTVDLQQPAPKNVKQLNTSPGISAYKYKEATVIRPGSLLPEEEFVHSIPYICTEQTMEEQVNSHIEHEERWESSPGFDVLVDDEMENLGYEDDSEYLTMLDREHQELNGQYMRYEFKDTVEYDPICPEADILYEQEMYDVYRCMDGDHTFADDRKFPAYCRERIIDSILSRKRIRVPAEMTACDRNLDLRDHLRRRREINGQSVPGLLRRQESSCLMIRNQDRHRRHGPEQRLSRSLTSEVGLSTIDSNGVGETLPINKHGIFRYSQQHTSRKHYKEKLAKRQFLSSKIPRKPVSKQRRSIHESTNSAFNGPKTLAEIKEEKKKAAERGHFKSAAADFQDPKPLSEILKDKRRSDGVRDDNACSI 609
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2148 609 FunFam Zinc finger CCCH domain-containing protein 17 79 142 - -
Bisa08g2148 609 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 166 186 IPR000571 GO:0046872
Bisa08g2148 609 MobiDBLite consensus disorder prediction 196 221 - -
Bisa08g2148 609 SMART c3hfinal6 118 141 IPR000571 GO:0046872
Bisa08g2148 609 SMART c3hfinal6 160 186 IPR000571 GO:0046872
Bisa08g2148 609 SMART c3hfinal6 86 113 IPR000571 GO:0046872
Bisa08g2148 609 Pfam Zinc-finger containing family 86 142 IPR041686 -
Bisa08g2148 609 ProSiteProfiles Zinc finger C3H1-type profile. 85 114 IPR000571 GO:0046872
Bisa08g2148 609 MobiDBLite consensus disorder prediction 462 477 - -
Bisa08g2148 609 MobiDBLite consensus disorder prediction 194 221 - -
Bisa08g2148 609 ProSiteProfiles Zinc finger C3H1-type profile. 116 142 IPR000571 GO:0046872
Bisa08g2148 609 MobiDBLite consensus disorder prediction 526 609 - -
Bisa08g2148 609 Gene3D - 151 245 - -
Bisa08g2148 609 Gene3D - 75 143 - -
Bisa08g2148 609 ProSiteProfiles Zinc finger C3H1-type profile. 160 187 IPR000571 GO:0046872
Bisa08g2148 609 MobiDBLite consensus disorder prediction 587 609 - -
Bisa08g2148 609 MobiDBLite consensus disorder prediction 559 579 - -
Bisa08g2148 609 PANTHER ZN-FINGER, C-X8-C-X5-C-X3-H TYPE-CONTAINING 80 599 - -
Bisa08g2148 609 MobiDBLite consensus disorder prediction 462 483 - -
Bisa08g2148 609 SUPERFAMILY CCCH zinc finger 160 185 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2148 Bisa-ChrBisa08 51120144 51125098 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa08g2148 zf-CCCH_3 3.4e-11 CL0537