Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2138 ATGGTTTCAACGAGACGTAGTGGATCTCTCTCTGGCAACAATAGCAAAAGATCTTCCTCCTCGGAAGATAAGCCTCCCTCACCGAAGCGTCCAAAGCCCGACAATGGTGGTCCGTCGGAGAAACCGATGCCGACAGCGGAGAATTCTAAAGAATTCTGTACTGCGGAGCCGGCTGCTGATCCTGCAGAATGCGATGCTCAGATCGCTGGAGAGGGTACTGGTGAAGCTGTGAGTTCTGGCAAGGGTGATGCTGCGGTGCCTGCCCCTGTGGCGCCGCCGATCGCTGATGGGTCCTCGCCGACTATGGTGGTTGATAAGCCGAGGGGTTCTTTGTCTTCTTGGAGCATATATCAGAAGCAAAACCCGAGTTTTGAGACTTCGACGCCTTGGTGCAGGCTTTTATCGCAGTCTGCCCAGAACCCAACCGTTTCCATTTACACACCAAACTTCACTATTGGTGCTAGTAGAAATTGCAACTTTCCCCTGAAGGATCAAACTATAAGTGGAAATCTATGCAAGATCAAACATACCCAGCGTGAGGGATGTGCTGTAGCTTTGCTGGAAAGTACGGGCAGCAAAGGATCTGTGCTAGTTAATGGGACACTTCTCAAGAAGAACACCAGCTGTGTGCTTAACTCAGGCGATGAAGTGGTCTTCGGTTTGCTGGGAAATCATTCTTATATTTTTCAGCAACTAAATACTGAGGTTGCAGTTAAGGGTGCAGAAGTTCAGAGTGGTGTAGGGAAATTTCTGCAGCTTGAAAGGAGAACTGGAGACCCTTCAGCTGTGGCTGGGGCTTCTATTTTGGCATCTCTTTCTAGCCTCAGACAGGATCTTTCAAGATGGAAATCTCCGACTCAGAATGCCAATAAAGCTCACCAGGGTACTGATGTCTCTGCTCCTTCTGTTCTTCATGATACTGCAGATATCGAGCTCGATGGCCTGGAAGGCAACTCAACTCCAAATGCTGGAAGTGATAAAGCAGCCGATGTTGGAGCAAGCGACAAGAATCATCCAATGGAATGCAATCCAGATGCTAACACAGAGGCAGGCAATGTAAAACTTTCTGGGATGAATGATTTCCTAGGGCAATTCAGGATCTTAGCTCAATGTAATTGTAATCTGAAATTATGCAAAAGTATCTTTAAACAGGTATTGGAAGAAATAAATGGGACGAGGGATATGTTGGCAGCGTCAACCTCGGGTATGTCTGTGCGCTGTGCAGTGTTTAAGGAAGATGTTCAGGCTGCAATATTGGATGGTAGAGATATAGACGTATCATTTGACAACTTCCCATACTATTTAAGTGAGAACACAAAGAATGTCTTGGTTGCAGCTTGCTTTATTCACCTGAGGCATAAGGAACATGTAAAATACACTACAGATCTTACAACTATTAACCCGCGTATTTTACTTTCTGGACCTGCAGGGTCGGAAATTTATCAGGAGATGTTGGCAAAAGCACTTGCCAATTATTTTGGAGCTAAGTTGCTCATATTTGATAGCCATTTGCTTTTGGGTGGTTTATCATCCAAGGAAGCTGAACTACTCAAGGATGGACTTATTGCTGAAAAATCCTGCAGCTGCTCCAAGCAAAGTCCGCCAGCATTAGACTTGCCTAGAAACATGGACACATCAACTAGTGAAACAGACACGCCTAGCTCTTCAAATGTACCTACCCCATGTGGCCTTGAATCTCAACCTAAGATGGAGACCAATACTGTACCTTCTACTTCTGGGACAGCTAAAAATTACGTGTTTAAATCAGGTGACCGTGTAAAATATAGCTCCTCATCTTCTGGTGGTTTGTATCAGACATCTTCAAGGGGCCCACCTAATGGAAGTCGGGGGAAGGTTGTGTTATGTTTTGAGGATAATCCTCTGTCAAAAATTGGTGTAAGATTTGATAAACCCATATTTGATGGAGTTGATCTTGGAGGTGCCTGTGAAGGAGGTCAAGGATTTTTCTGCAATGTTAATGATCTTCGATTGGAAAACAGTGGTGTGGAAGAATTGGATAAATTACTAATCAACACATTGTTTGAGGTTGTTTTTAGTGAGAGCAGAAGTGCACCTTTCATTTTGTTCATGAAAGATGCCGAGAAGTCTATTGTAGGAAATGGAGATCCATATTCATTTAGAAGTAGGCTTGAAAACCTTCCAGACAATGTCGTTGTAATAGGTTCACACACTCACATTGACAGTCGAAAGGAGAAGTCACATCCTGGTGGTCTGCTTTTTACAAAGTTCGGTAGCAATCAGACTGCCCTTCTTGACTTGGCTTTCCCGGATAGCTTTGGAAGATTGCATGAGAGGGGGAAGGAGGTCCCAAAGCCAAACAAAACATTGACTAAGCTTTTCCCTAATAAAGTAACAATTCACATGCCACAGGATGAGGGACTTCTGGCATCTTGGAAGCAGCAGCTGGATCGAGATGCAGAGACTCTAAAAATTAAAGGAAATTTGCATCACCTGCGCACAGCTTTGGGCCGTTGTGGGATGGAATGTGATGGACTTGAGACTTTGTGCATTAAGGACCAGACGGTTACAAATGAAAACGCAGAGAAGATAATTGGTTGGGCCTTAAGTCACCACCTCATGCAGAACCCTGAAGCTGATCCTGATTCAAAGCTTGTATTGTCTTGTGAGAGCATCCAGTATGGAATTGGGATCTTGCAGGCTATCCAGAATGAGTCCAAGAGCTTGAAGAAGTCTCTGAAGGATGTTGTAACAGAAAATGAGTTCGAAAAGAGGCTTTTGGCTGATGTAATTCCACCTAGTGACATTGGTGTTACTTTTGATGATATTGGAGCTCTTGAAAATGTCAAGGATACGCTGAAGGAGCTGGTGATGCTTCCTTTGCAGAGGCCTGAGCTCTTTTGCAAGGGGCAATTAACCAAGCCTTGTAAGGGTATCCTATTGTTTGGTCCACCTGGAACAGGGAAGACAATGCTTGCGAAGGCTGTTGCTACTGAAGCTGGTGCAAACTTCATCAACATTTCCATGTCAAGCATTACGTCTAAGTGGTTTGGTGAGGGTGAGAAATATGTGAAAGCTGTTTTCTCTCTGGCCAGTAAAATTGCTCCTAGTGTGATATTTGTTGATGAAGTTGACAGCATGTTGGGCAGGAGGGAAAATCCAGGGGAGCATGAGGCCATGCGTAAGATGAAAAATGAATTCATGGTGAACTGGGATGGCTTACGTACGAAGGATACTGAGCGAGTTCTTGTACTTGCAGCCACTAATAGGCCTTTTGACCTTGATGAGGCTGTCATCCGGAGGCTGCCGCGAAGATTGATGGTAAATTTGCCAGATGCTCCAAATAGAGCAAAAATATTGAAAGTTATACTAGCAAAAGAGGACTTGTCTCCTGATGTTGATTTGGATGTAATTGCAAGTATGACTGATGGATATTCTGGAAGTGATCTTAAGAATCTGTGTGTGACTGCTGCACACCGTCCAATTAAAGAGATATTAGAGAAGGAAAAAAAGGAGCGTGCTGCTGCCGTAGCAGAAGGTAAACCTCCTCCAGCATTAAGCAGTAGTGCTGATGTCCGATCTTTGAACATGGAAGACTTCAAAGATGCTCATGAACGGGTATGTGCAAGTGTTTCTTCAGAATCCGTAAATATGACTGAGCTCACACAATGGAATGAACTGTATGGCGAAGGTGGTTCAAGAAGAAAGAGAGCACTCAGTTATTTCATGTGA 3711 0.443 MVSTRRSGSLSGNNSKRSSSSEDKPPSPKRPKPDNGGPSEKPMPTAENSKEFCTAEPAADPAECDAQIAGEGTGEAVSSGKGDAAVPAPVAPPIADGSSPTMVVDKPRGSLSSWSIYQKQNPSFETSTPWCRLLSQSAQNPTVSIYTPNFTIGASRNCNFPLKDQTISGNLCKIKHTQREGCAVALLESTGSKGSVLVNGTLLKKNTSCVLNSGDEVVFGLLGNHSYIFQQLNTEVAVKGAEVQSGVGKFLQLERRTGDPSAVAGASILASLSSLRQDLSRWKSPTQNANKAHQGTDVSAPSVLHDTADIELDGLEGNSTPNAGSDKAADVGASDKNHPMECNPDANTEAGNVKLSGMNDFLGQFRILAQCNCNLKLCKSIFKQVLEEINGTRDMLAASTSGMSVRCAVFKEDVQAAILDGRDIDVSFDNFPYYLSENTKNVLVAACFIHLRHKEHVKYTTDLTTINPRILLSGPAGSEIYQEMLAKALANYFGAKLLIFDSHLLLGGLSSKEAELLKDGLIAEKSCSCSKQSPPALDLPRNMDTSTSETDTPSSSNVPTPCGLESQPKMETNTVPSTSGTAKNYVFKSGDRVKYSSSSSGGLYQTSSRGPPNGSRGKVVLCFEDNPLSKIGVRFDKPIFDGVDLGGACEGGQGFFCNVNDLRLENSGVEELDKLLINTLFEVVFSESRSAPFILFMKDAEKSIVGNGDPYSFRSRLENLPDNVVVIGSHTHIDSRKEKSHPGGLLFTKFGSNQTALLDLAFPDSFGRLHERGKEVPKPNKTLTKLFPNKVTIHMPQDEGLLASWKQQLDRDAETLKIKGNLHHLRTALGRCGMECDGLETLCIKDQTVTNENAEKIIGWALSHHLMQNPEADPDSKLVLSCESIQYGIGILQAIQNESKSLKKSLKDVVTENEFEKRLLADVIPPSDIGVTFDDIGALENVKDTLKELVMLPLQRPELFCKGQLTKPCKGILLFGPPGTGKTMLAKAVATEAGANFINISMSSITSKWFGEGEKYVKAVFSLASKIAPSVIFVDEVDSMLGRRENPGEHEAMRKMKNEFMVNWDGLRTKDTERVLVLAATNRPFDLDEAVIRRLPRRLMVNLPDAPNRAKILKVILAKEDLSPDVDLDVIASMTDGYSGSDLKNLCVTAAHRPIKEILEKEKKERAAAVAEGKPPPALSSSADVRSLNMEDFKDAHERVCASVSSESVNMTELTQWNELYGEGGSRRKRALSYFM 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2138 1236 CDD FHA 132 230 - -
Bisa08g2138 1236 SUPERFAMILY SMAD/FHA domain 115 229 IPR008984 GO:0005515
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 528 613 - -
Bisa08g2138 1236 Pfam FHA domain 151 220 IPR000253 GO:0005515
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 1 59 - -
Bisa08g2138 1236 Gene3D - 930 1211 IPR027417 -
Bisa08g2138 1236 Gene3D - 1104 1198 - -
Bisa08g2138 1236 FunFam p-loop nucleoside triphosphate hydrolase superfamily protein 930 1106 - -
Bisa08g2138 1236 ProSitePatterns AAA-protein family signature. 1075 1094 IPR003960 GO:0005524|GO:0016887
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 22 36 - -
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 1 21 - -
Bisa08g2138 1236 PANTHER AAA ATPASE, PUTATIVE (AFU_ORTHOLOGUE AFUA_2G12920)-RELATED-RELATED 410 1235 - -
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 71 102 - -
Bisa08g2138 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 931 1211 IPR027417 -
Bisa08g2138 1236 Coils Coil 892 912 - -
Bisa08g2138 1236 Gene3D - 129 238 - -
Bisa08g2138 1236 SMART AAA_5 968 1105 IPR003593 GO:0016887
Bisa08g2138 1236 Pfam AAA+ lid domain 1125 1160 IPR041569 -
Bisa08g2138 1236 Pfam ATPase family associated with various cellular activities (AAA) 972 1101 IPR003959 GO:0005524|GO:0016887
Bisa08g2138 1236 CDD RecA-like_ATAD1 935 1101 - -
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 281 301 - -
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 528 615 - -
Bisa08g2138 1236 MobiDBLite consensus disorder prediction 281 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2138 Bisa-ChrBisa08 50822760 50851230 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2138 931 1183 Calmodulin-binding Proteins AT3G56690 40.385 3.53e-42 166