Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2127 ATGGGAAGCCACGGAGAGGCTTTGGTCGTGTGCGGCGACAGAAGCATGGGGTTAGGGTTAAAGATATTGGACATGGACACGGGTGAAGTTCTGCTTCACTTGCCGAATTGCGCTTCGCCTTCTAGCGGGTTGGTGTGCTTAAGAAACCAGTTTATTGCGGCGTCGCAAATTAACAGACACGGATCTGCGGGCGGCGGAGCCATTGGCATCTGGCCTTTGAATAAGCCTCAACAGTCTCTTTGGAACTACCCATTGGAAGCCATCGGGCCACTTTCATGCACAAAAGATGGCACATATCTTGCTGGAGGAACTTTGTCAGGAAATGCTTATCTCTGGGACGTCACTAGTGGAGAATTGCTTAAGACTTGGAGTGTTCAAAATAAATCTCTGAACTGCTTGGTGTTTTCAGATGATGATTCTCTCCTCATTTCTGGTTCAGATGATGGTATGATCTATGTTTGGTCCTTGATTAGTTTGTTAGATGTAGAAGGAATGGAAAGCTTCCCTTCTCTATTACATTGTTTATCCGGGCACACATCCACTATAACAGGTCTCTTAACTACATCAGGCAACTGCTTCTCAGTTTTAATATCAAGCTCCCTTGATGGAGCTTGCAAGGTTTGGGACTTCATCTCAGGAAGTCTTGTGCAAACTCAGGTTCATCCTTTGGCAATAACTTCTGTTGCTCTTCACCAAGGAGAAGGACTCTTGTTTTTTGGATCAGTAAATGGACATATAATTGTCAAAAAGCTAAATGTTGGTCTCGAGGAAGATCGTTCTGTTATCACAGTAGACCAATCACTGGAATTGAAAGGACACAATGGAGCCATTACTGCCCTGACCTCTGGTCAGGCAGGCCTAATATCTGCCTCTGAAGACCGCACAATCTGCATTTGGGATGTCATCAGCTGGGCGGTTATTCGAAGGTTCAATCTTGAAAAAGGGAAAATAACTAATCTGGCAGTAGTTCTGAAGTCTTCGATGCTCTCTCCATCAAATTGTAGGAGAGTCTTTAATCAGTATATTGTCTCTTCTCTTGACAAGTATCCTCAACCAAGCAACTCATCCAAGGGATCTACTCTCCTTTCTCTAGACTGCTCCCAGCACATGCCGTCTGCACAGAAAGTGCATATGTCTATGGACATGGCCATGCAAATGAAAGTGGAAACAAGTATAGAGAATCGATTGTGGGCGAATAAGATGACAAAGCATGTCATGGAGATAAATAAACATTTGCAATCACAGCTGTTGGACTTGATGCAGCAAAGATTGTTTCGGCCAACAGGAACTAACATAGAAAAAACTACCAAAAGGAAGCTTAAAGTTCACAGAGCTTTGACATTAGCTGCTGCAATAATGGCCCAGCTGAAGGCATTTTCCCCATATTCTTGCTTCAATCTTGCTCCCTATGGACATAGAACAGAGAATCCGCTGCTTCCCCAAATCTGGAAGGCGAAGCCATCATCATTCAGAGAGCTGGGGCCAAGAACAAGTGCTGGTGTCTCTAAACTTCCAGTAATAAAAGCAGTTGTACACAAGGAAACAGAAGTTTCCAAAACCAAGGATAGTGGGCTTCGTGGAAAATTAAATAAGGTTGTGCTAGCTTATAGTGGTGGCTTAGATACATCAGTCATTGTTCCATGGCTAAGAGAGAATTATGGTTGTGATGTCGTTTGCTTCACTGCTGATGTTGGCCAGGGTTTAAAAGAATTGGAAGGTTTAGAAGAGAAGGCCAAGGCCAGTGGAGCCTCTCAGTTGGTAGTGAAGGACTTGAAGGAGGAATTCGTCCGAGATTATATATTCCCTTGCTTGCGTGCTGGTGCAATTTATGAGAGGAAGTATTTGCTTGGGACCTCAATGGCTCGCCCCGTTATTGCAAAAGCCATGGTGGACGTTGCCAAAGAAGTAGGAGCTGATGCTGTATCTCATGGATGTACCGGGAAAGGAAATGATCAGGTTCGGTTTGAGCTCACATTCTTTGCTCTGAATCCCAAGCTAAATGTTGTGGCTCCATGGAGGGAGTGGGATATTACAGGGAGAGAAGATGCTATTGAGTTTGCGAAAAAGCATAATATACCTGTTCCGGTAACAAAGAAATCCATATATAGCAGGGACCGAAACCTATGGCACCTTAGTCATGAGGGTGATATTCTGGAAGACCCAGCAAAAGAGCCGAAAAAGGATATGTACATGATGTCTGTGGACCCAGAGGATGCTCCAAATCAAGCAGAATATGTGGTAATTGGAATAGAGGCAGGGATACCCGTTTCAGTCAACGGGAACAGGCTTTCACCAGCATCTTTACTTTCCATGCTCAATGAGATTGGCGGAAAGCATGGAATAGGCCGGATCGACATGGTTGAAAACCGGCTCGTAGGTATGAAGAGCCGAGGAGTCTATGAAACTCCGGGTGGGACCATCCTTTTCACCGCTGTACGTGAGTTAGAATCTCTAACGCTTGACCGGGAAACAATTCAGGTCAAGGACTCATTGGCCCTTAAATATGCAGAGCTAGTTTACGCCGGGAGATGGTTTGATCCACTCCGGGAGTCCATGGACTCCTTCATGGAGAAGATCACAGAGACCACAACAGGTTCTGTGACATTGAAATTGTACAAGGGTTCTGTTAGTGTGGCGAGTCGGACAAGCCCTTACAGCCTGTACAGGCAAGACATTTCGTCATTTGAGAGTGGACAGATATATGATCAAGCCGATGCTGCCGGGTTTATACGGCTTTATGGGCTTCCAATGAGGGTGAGATCAATGCTTGGGCAGGGCATGGAACCAAGAGAACCATTACCCAATTTCAGAGAACCAAGAGAACCATTACCCTGGCCGTTGGATCAAAGTAGTTTCCTTCGTTCCTGTTACTCCTGTAAGATGTCTCTCGATCACACTAAGGACATCTTCATCTACAGAGGTGAGAAAGCTTTCTGCAGCGAGAAGTGCCGCGACGAAGAGATGGCATTAGATGGAGAAGAAAATTCAGAATTTGATGCATGA 3003 0.4515 MGSHGEALVVCGDRSMGLGLKILDMDTGEVLLHLPNCASPSSGLVCLRNQFIAASQINRHGSAGGGAIGIWPLNKPQQSLWNYPLEAIGPLSCTKDGTYLAGGTLSGNAYLWDVTSGELLKTWSVQNKSLNCLVFSDDDSLLISGSDDGMIYVWSLISLLDVEGMESFPSLLHCLSGHTSTITGLLTTSGNCFSVLISSSLDGACKVWDFISGSLVQTQVHPLAITSVALHQGEGLLFFGSVNGHIIVKKLNVGLEEDRSVITVDQSLELKGHNGAITALTSGQAGLISASEDRTICIWDVISWAVIRRFNLEKGKITNLAVVLKSSMLSPSNCRRVFNQYIVSSLDKYPQPSNSSKGSTLLSLDCSQHMPSAQKVHMSMDMAMQMKVETSIENRLWANKMTKHVMEINKHLQSQLLDLMQQRLFRPTGTNIEKTTKRKLKVHRALTLAAAIMAQLKAFSPYSCFNLAPYGHRTENPLLPQIWKAKPSSFRELGPRTSAGVSKLPVIKAVVHKETEVSKTKDSGLRGKLNKVVLAYSGGLDTSVIVPWLRENYGCDVVCFTADVGQGLKELEGLEEKAKASGASQLVVKDLKEEFVRDYIFPCLRAGAIYERKYLLGTSMARPVIAKAMVDVAKEVGADAVSHGCTGKGNDQVRFELTFFALNPKLNVVAPWREWDITGREDAIEFAKKHNIPVPVTKKSIYSRDRNLWHLSHEGDILEDPAKEPKKDMYMMSVDPEDAPNQAEYVVIGIEAGIPVSVNGNRLSPASLLSMLNEIGGKHGIGRIDMVENRLVGMKSRGVYETPGGTILFTAVRELESLTLDRETIQVKDSLALKYAELVYAGRWFDPLRESMDSFMEKITETTTGSVTLKLYKGSVSVASRTSPYSLYRQDISSFESGQIYDQADAAGFIRLYGLPMRVRSMLGQGMEPREPLPNFREPREPLPWPLDQSSFLRSCYSCKMSLDHTKDIFIYRGEKAFCSEKCRDEEMALDGEENSEFDA 1000
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2127 1000 Gene3D - 3 217 IPR015943 GO:0005515
Bisa08g2127 1000 NCBIfam argininosuccinate synthase 531 920 IPR001518 GO:0004055|GO:0005524|GO:0006526
Bisa08g2127 1000 Pfam Arginosuccinate synthase 533 919 IPR001518 GO:0004055|GO:0005524|GO:0006526
Bisa08g2127 1000 ProSiteProfiles Trp-Asp (WD) repeats profile. 175 218 IPR001680 GO:0005515
Bisa08g2127 1000 ProSitePatterns Argininosuccinate synthase signature 1. 535 543 IPR018223 GO:0004055|GO:0005524|GO:0006526
Bisa08g2127 1000 SUPERFAMILY Argininosuccinate synthetase, C-terminal domain 699 925 IPR024074 GO:0004055
Bisa08g2127 1000 Pfam WD domain, G-beta repeat 171 209 IPR001680 GO:0005515
Bisa08g2127 1000 Pfam WD domain, G-beta repeat 117 155 IPR001680 GO:0005515
Bisa08g2127 1000 Pfam WD domain, G-beta repeat 269 300 IPR001680 GO:0005515
Bisa08g2127 1000 PANTHER ARGININOSUCCINATE SYNTHASE 527 924 IPR001518 GO:0004055|GO:0005524|GO:0006526
Bisa08g2127 1000 Gene3D HUPs 531 700 IPR014729 -
Bisa08g2127 1000 SUPERFAMILY WD40 repeat-like 68 326 IPR036322 GO:0005515
Bisa08g2127 1000 Gene3D Argininosuccinate synthetase, chain A, domain 2 591 881 IPR024074 GO:0004055
Bisa08g2127 1000 PRINTS G protein beta WD-40 repeat signature 287 301 IPR020472 -
Bisa08g2127 1000 PRINTS G protein beta WD-40 repeat signature 142 156 IPR020472 -
Bisa08g2127 1000 PRINTS G protein beta WD-40 repeat signature 196 210 IPR020472 -
Bisa08g2127 1000 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 270 301 - -
Bisa08g2127 1000 Gene3D Single helix bin 901 927 - -
Bisa08g2127 1000 ProSiteProfiles Trp-Asp (WD) repeats profile. 123 156 IPR001680 GO:0005515
Bisa08g2127 1000 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 123 156 - -
Bisa08g2127 1000 FunFam Argininosuccinate synthase 526 702 - -
Bisa08g2127 1000 CDD Argininosuccinate_Synthase 532 916 IPR023434 GO:0004055
Bisa08g2127 1000 SMART WD40_4 263 300 IPR001680 GO:0005515
Bisa08g2127 1000 SMART WD40_4 116 155 IPR001680 GO:0005515
Bisa08g2127 1000 SMART WD40_4 76 113 IPR001680 GO:0005515
Bisa08g2127 1000 SMART WD40_4 168 209 IPR001680 GO:0005515
Bisa08g2127 1000 SMART WD40_4 212 250 IPR001680 GO:0005515
Bisa08g2127 1000 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 530 694 - -
Bisa08g2127 1000 ProSiteProfiles Zinc finger FLZ-type profile. 951 995 IPR007650 -
Bisa08g2127 1000 ProSitePatterns Argininosuccinate synthase signature 2. 644 655 IPR018223 GO:0004055|GO:0005524|GO:0006526
Bisa08g2127 1000 ProSitePatterns Trp-Asp (WD) repeats signature. 287 301 IPR019775 -
Bisa08g2127 1000 FunFam Argininosuccinate synthase 703 926 - -
Bisa08g2127 1000 Hamap Argininosuccinate synthase [argG]. 529 925 IPR023434 GO:0004055
Bisa08g2127 1000 Gene3D - 218 348 IPR015943 GO:0005515
Bisa08g2127 1000 ProSiteProfiles Trp-Asp (WD) repeats profile. 270 301 IPR001680 GO:0005515
Bisa08g2127 1000 Pfam zinc-finger of the FCS-type, C2-C2 948 993 IPR007650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2127 Bisa-ChrBisa08 50609769 50624300 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2127 100 312 U-box Gene Family AT1G04510 24.545 8.72e-08 54.3