LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g2100	ATGTATATGTTTCTGCCTCCAAAATTTGGTCCTACAGCATCAGCCTTGGTCAATAAAGAAGCCATTATTGAGGACTCAAATGAGCAGCAATGGAAGGTAGTAGTATCAATTGTTGACAAGTCTTTTGCTTTTCAGCAAGGATGGAATGCTTTTTCATTAAAGCATGGGCTTGAAGTTGGAAATTTTTTGGTATTCAATTACATCAGAGGATCACACTTTGTTGTTAAGATCTACGATAAATCTGGGTGCGGAAAGATTGATTTTTCCAAAAAACGAAATCAGAAGAAAAGATGTAGGAGCAAAACAAAAATTGATGTTATAGATGACATGTTAAATAAGCAAGGTTCATACCCTGAGTCAAACGTTGAAAACACACAAAGCCAGAGCGTTGTGTTTGTGGGAGAAATAGAAGAAAGCAAGTCCTCAACTAAAATGAAATCTGCTTCAGAGGGTCGTGGATCAAAGGAAAATGTAAGAGAAGAAGAGGATGATTCATTCGAACAACCAATAAACTTTAGTGCAACCAAACAGAAAAGAAAAAGATTGAGCAAGCATCCTCCAACTGAAAAAGCAAAAGGGAGAAACAAGAAGGTACTTTGTGAAGAACTAGAAGACAAAGAGGAAGAAGTGGATGGAAAAGAATATGCAAACCCAAAAGATAATCAGTTAGGTATGCCCATTGATTTTTGGGATGCAGAAACTGCATTAAGATTTTCAAAATATTTCAAAAAGAGACCAATTGCTACGGGTAGGATAGTAGACTTTAACAAGCTTGATGAAGTAGGCAGTAAAATTGAGAAATTTTTTGATGATGTGCATTGGAGCCCCTTGCTAAAAGTAAAAGAAGTTGTTTTTGAAGATTTGGTGAGAAAGTTTTATGCCAACCTCAGGGTAAAAGAACAGTTGGTGGAGAAACATGATTTGCTGCAGCCAAGAAAGTTTAATGCCTTCGCTCTCAACTTGGAATATAGGGTAATGGCTCACATTATAGCCACATGTGTCATGCCAAGAGTTAGGTCTCTGGAAGTGTTAAACAAAAGAGAAACATGTATCCTTTATTGCTTGGTGAACAAGATTCCTATCAACCTACCTTTGTGGATTATCAAATACATGGTAGAGAGTGGAAGGAGCAATGAGCTTGCTGCAAGTCTACCCTATGGAATGCTATTAACAAAGATTTTTAGGGCAAGTAAGGTAAATCTTACTAAATGCTTATTCAAGGAAGTGGAATCAAGATATGATGCAACATCTCTAAAGTTTATGAAGTGCAAACAAAAGCCAAGAAATTCCAATCCATCTACATTGAATGCTCTTGTGCTAAGTCTTTATAAACCAAGACATTTCTAA	1347	0.3653	MYMFLPPKFGPTASALVNKEAIIEDSNEQQWKVVVSIVDKSFAFQQGWNAFSLKHGLEVGNFLVFNYIRGSHFVVKIYDKSGCGKIDFSKKRNQKKRCRSKTKIDVIDDMLNKQGSYPESNVENTQSQSVVFVGEIEESKSSTKMKSASEGRGSKENVREEEDDSFEQPINFSATKQKRKRLSKHPPTEKAKGRNKKVLCEELEDKEEEVDGKEYANPKDNQLGMPIDFWDAETALRFSKYFKKRPIATGRIVDFNKLDEVGSKIEKFFDDVHWSPLLKVKEVVFEDLVRKFYANLRVKEQLVEKHDLLQPRKFNAFALNLEYRVMAHIIATCVMPRVRSLEVLNKRETCILYCLVNKIPINLPLWIIKYMVESGRSNELAASLPYGMLLTKIFRASKVNLTKCLFKEVESRYDATSLKFMKCKQKPRNSNPSTLNALVLSLYKPRHF	448

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g2100	448	ProSiteProfiles	B3 DNA-binding domain profile.	1	81	IPR003340	GO:0003677
	Bisa08g2100	448	Pfam	Putative plant transposon protein	312	399	IPR046796	-
	Bisa08g2100	448	MobiDBLite	consensus disorder prediction	141	196	-	-
	Bisa08g2100	448	PANTHER	B3 DOMAIN-CONTAINING	18	204	-	-
	Bisa08g2100	448	CDD	B3_DNA	3	79	IPR003340	GO:0003677
	Bisa08g2100	448	Gene3D	-	1	83	IPR015300	-
	Bisa08g2100	448	SUPERFAMILY	DNA-binding pseudobarrel domain	2	83	IPR015300	-
	Bisa08g2100	448	MobiDBLite	consensus disorder prediction	141	166	-	-
	Bisa08g2100	448	Pfam	B3 DNA binding domain	3	80	IPR003340	GO:0003677

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g2100	Bisa-ChrBisa08	50261433	50262938	Tandem

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g2100	3	85	B3 DNA Binding Superfamily	AT5G66980	33.333	1.24e-07	51.6

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	B3	Bisa08g2100		B3	3.9e-11	CL0405