LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g2083	ATGCAGGAGAGGATGGCGATGGACGATAACAAGCGACAACAGATGGAGACGCGACGACAGTTATTTACGACTCTGCCACTTCCCAGTTCCTCCTCCTCCTCTCCTCCTTCTTTGTCTATCTACTCTTCCTCCTTTCAGTTACCCAATGCTCCCAGTCGCAGGCTCCACCATCAAGGCCTCTCTGTCATGCTTAGGGTTTCTCAGAAACATCCCGCTTTTTACGCTACTTCACTCTCATTTCTTCTTCCTCACTCTCCAAGACTATCGTTTTTTGATATTTCTATTCTGCAGATACATATTTTCAAGGCGATGATGGATGGGAGGCGGCATTCAGTTGATATTCCTATTTCAAAAACTCTTGTGGCATTGAGGAGAGTCAGGTCACTGAGGGATCCATCTACGAATTCTATGAGCAAACTCTGTTCTTCGATTGATAATCTACACTGGGAAAACAGTTCGGGCAATGGGATTTCTCTGCGTTTCTCGGATGCTTCTCGTGCTTGTGATTCTGATGATAACGGTGCTTTAAGGTCGAAGAATGTAAGTTATAAGCTGAACAGAGAGCACGATGCTGCTGAATTTGAATTGAACGGTGGCCTTTTCAACTCTAAGCTTAAGTCTTGTCCCGAAGGACAGCAGGATGATGAACTAGCTTACTCTGATTTGAATCAGGAGGGCAATTCTGGAAATAAGTCCCCGAGTGAAACCTGTTATATCAACCATGGAGGTAAGGAATTGGATTTATCATGCACTATTGCTCCTAGTAATGAGGCAACTTCTGGTTCGTCCAAATTAGGGAGAATAGATCATTCCAAGTCAAGTAGAAAGACCCTATGCAAGAATCTAGTGAAACTATCTGAAGTAGTCGGTAATGATCTTGCAAGTCTTAGAGGTAGTCCATGCCTTTCGGTTGGTGATGATGCTCTGTTAGCCTACAGTTCATCGATGAATATGAATCAAGATGTTGATATTGTAGATAATAATCGTCACGGATGTGGAATAAGTTGTTGTTGGTCAAAATCGCCGAGGTTCAGAGAATCAAATATTTATTCTGATATAGAAGACCGTCCGTTGATAACCTGGCACACTGACGAGACAGCATTTTATGGACACAAAAGCACAAGGCACATTGGTGGTGAAATCAGTCCAAATTTGGAAACACCCAGAAGTCTAAGTATGAAATTTAGGCCAAAATCTTTTAATGATTTGGTTGGACAAAATGTGGTAGCAAGGTCTCTTTTGGGTGCCATCTCTAAAGGAAGAATAACCTCATTCTATATCTTCCATGGTCCCCGTGGAACGGGCAAGACCTCTGCCTCAAGAATTTTTGCTGCTGCACTGAATTGTCTCTCCCTTGAGGAGGAAAGGCCATGTGGCGTGTGCAGAGAATGTGTTTTGTTCTTTTCTGGAAGATGTAAAGATGTTAAGGAAGTGGATTCTGTGAGAATCAATCGTATTGACAAGGTAAAATCTCTTGTTCAGAACGCATGCATACCCCCAGTTTCCTCACGATTTAAGGTTTTTATTGTTGATGAGTGCCAGTTGATACAAGGGGAAACATGGGCGAGTCTTTTGAGTAGCCTAGAGAACCTATCTCAACATGTGGTTTTTGTGATGATCACTCCTGATTTGGATAAGCTTCCCCGAAGTGCAGTTTCCCGGGCACAGAGGTATCACTTTCCAAAGATAAAAGATGCTGACATTGCAAGCAGATTGGAAAAAATTTGTATCGAAGAAGGTCTTGATTTTGAACAGGTTGCTTTGGACTTCATTGCTACTAAATCATGTGGTTCACTTAGAGATGCGGAAATCATGCTTGATCAGTTAAGCTTGCTTGGTAAAAAAATCTCAGTTTCATTGGCTTACGAGCTTACTGGTATCATTTCTGATGATGAATTGCTTGAATTACTGGATCTGGCGTTGTCATCTGACACTTCAAATACAGTTCTAAGAGCCCGAGAGCTAATGAGATCAAGGGTGGATCCTTTGCAACTTATATCACAGCTGGCAAATCTCATTATGGACATTCTTGCAGGGAAATGCAATGATGGTGGTTCAGAAACCAGGAGAAGGTTTTCTAGTAGACGTAACTCTGAAGCCGATCTGCAGAAACTAAATCACGCATTAAGAATACTCTCTGAAACTGAGAAGCAATTGAGAATTTCAAAGAATCAAACAACATGGTTCACAGTAGCTCTTCTACAGTTAAGCTCTGCAGACTATTCTTCTGTGGAAGCAAATGATACCAAATTGAGTTTGAGAGATGCATGCAATGGAGATGGTGATTTTTGCAGTACGTCATCTACAGGGGAGAACACAAAGCATCTTGCTGTAGGTCAGTGTGACGACAAGTCCTATAAATTAGGAGTGCAGCAGGATCACAAAGGAACGTTAAATTCCATATGGTATAAAGCTACGGAGTTATGTCAATCTAACAGGCTGAAGACTTTTCTCAGGAAGCACGGGAAGTTGTCTTCACTCTGTGTTAATCACGGTCTTGCAATTGCTGAGTTGGAGTTCCACCATCGAGATTATGTATGTAGGGCTGAGAAGTCATGGAAACTGATTGCTAGTTCCCTGCAGCTCATAATGGGTTGTAACATTGAACTCAGGATCAATCATGTACCTTGTACTTCTGATTCTAAGTTTGCCAAATTGAAGAGGTCATCTTTCAGCTTTTTTAATTGCTCACGCAGAATGCGTCGGAAATCACTCTCATCTAATGAACAAGAAAGTGAACTAGACTATGCTAATTATACCTCTCAAAAACCCATGATGAAGGATAGAACTTTAATGTATACCTCCGACTGTGGATCTCAGGTGCCTCAACCTGAATCCTTCCATGGGATGGAGGTTGTAACAGCACTGAGAGATAGTGGAGGGAATTTGCTGAGCTCAAGGAAAAGCTTGAATGAGTCATGTCAAGAGACTTCAAGGACATCAAGTTCTGGGGTTGATTCCTCTAAGGAAGAGGGATTCGATTATACACATCTAGTTTCATCAAACCCTGATTCAGATAATCAATCAAAATGTTTTCCTCGAACTATCTGGTTTCATAAGAAGAGGCTACGCTCTCCAGATCTATCCCAGTTGATTTTCCGGGGTATCCCGCAACAGAAAGATTTTGTTTTGTCTGTCCCAAATTACACATGTTCTGAGACATATAGCTATGGTAATGAACCCTGTGTTTTCTCCAGCAGCTCTAACAACTGCACCAAAGCCGCCCAAAATGGGGAAAGCCCAAAGGTGGATTCAGACTCGCTTTGTTGGAGAACCCCCACATCTTCCTTGAGGAAGTCATGGTCTGTGGGGCTTAAGCAACAGAAGTCGCACCTTGCAGGGTGGTTTCTTCCCAGTGCCACGGCTAAGTAG	3372	0.4241	MQERMAMDDNKRQQMETRRQLFTTLPLPSSSSSSPPSLSIYSSSFQLPNAPSRRLHHQGLSVMLRVSQKHPAFYATSLSFLLPHSPRLSFFDISILQIHIFKAMMDGRRHSVDIPISKTLVALRRVRSLRDPSTNSMSKLCSSIDNLHWENSSGNGISLRFSDASRACDSDDNGALRSKNVSYKLNREHDAAEFELNGGLFNSKLKSCPEGQQDDELAYSDLNQEGNSGNKSPSETCYINHGGKELDLSCTIAPSNEATSGSSKLGRIDHSKSSRKTLCKNLVKLSEVVGNDLASLRGSPCLSVGDDALLAYSSSMNMNQDVDIVDNNRHGCGISCCWSKSPRFRESNIYSDIEDRPLITWHTDETAFYGHKSTRHIGGEISPNLETPRSLSMKFRPKSFNDLVGQNVVARSLLGAISKGRITSFYIFHGPRGTGKTSASRIFAAALNCLSLEEERPCGVCRECVLFFSGRCKDVKEVDSVRINRIDKVKSLVQNACIPPVSSRFKVFIVDECQLIQGETWASLLSSLENLSQHVVFVMITPDLDKLPRSAVSRAQRYHFPKIKDADIASRLEKICIEEGLDFEQVALDFIATKSCGSLRDAEIMLDQLSLLGKKISVSLAYELTGIISDDELLELLDLALSSDTSNTVLRARELMRSRVDPLQLISQLANLIMDILAGKCNDGGSETRRRFSSRRNSEADLQKLNHALRILSETEKQLRISKNQTTWFTVALLQLSSADYSSVEANDTKLSLRDACNGDGDFCSTSSTGENTKHLAVGQCDDKSYKLGVQQDHKGTLNSIWYKATELCQSNRLKTFLRKHGKLSSLCVNHGLAIAELEFHHRDYVCRAEKSWKLIASSLQLIMGCNIELRINHVPCTSDSKFAKLKRSSFSFFNCSRRMRRKSLSSNEQESELDYANYTSQKPMMKDRTLMYTSDCGSQVPQPESFHGMEVVTALRDSGGNLLSSRKSLNESCQETSRTSSSGVDSSKEEGFDYTHLVSSNPDSDNQSKCFPRTIWFHKKRLRSPDLSQLIFRGIPQQKDFVLSVPNYTCSETYSYGNEPCVFSSSSNNCTKAAQNGESPKVDSDSLCWRTPTSSLRKSWSVGLKQQKSHLAGWFLPSATAK	1123

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g2083	1123	Pfam	DNA polymerase III, delta subunit	406	563	-	-
	Bisa08g2083	1123	FunFam	DNA polymerase III subunit gamma/tau	564	626	-	-
	Bisa08g2083	1123	CDD	HLD_clamp_pol_III_gamma_tau	563	626	IPR045085	-
	Bisa08g2083	1123	SUPERFAMILY	post-AAA+ oligomerization domain-like	627	737	IPR008921	GO:0003677\|GO:0006260
	Bisa08g2083	1123	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	392	612	IPR027417	-
	Bisa08g2083	1123	MobiDBLite	consensus disorder prediction	966	990	-	-
	Bisa08g2083	1123	FunFam	Protein STICHEL-like 1 isoform C	627	740	-	-
	Bisa08g2083	1123	Gene3D	-	384	561	IPR027417	-
	Bisa08g2083	1123	MobiDBLite	consensus disorder prediction	17	35	-	-
	Bisa08g2083	1123	Gene3D	-	627	739	-	-
	Bisa08g2083	1123	Gene3D	-	564	626	-	-
	Bisa08g2083	1123	MobiDBLite	consensus disorder prediction	1	16	-	-
	Bisa08g2083	1123	NCBIfam	DNA polymerase III subunit gamma/tau	390	736	IPR012763	GO:0003887\|GO:0005524\|GO:0006260\|GO:0009360
	Bisa08g2083	1123	PANTHER	REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT	391	813	-	-
	Bisa08g2083	1123	Coils	Coil	695	715	-	-
	Bisa08g2083	1123	MobiDBLite	consensus disorder prediction	1	35	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g2083	Bisa-ChrBisa08	49963369	49970993	Dispersed/Transposed

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g2083	381	678	Core DNA Replication Machinery Family	AT1G21690	24.834	1.42e-12	68.6

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa08g2083	08	49963369	49970993	Bisa08g2083	08	49963369	49970993	ECH