Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2081 ATGACAACCCTCTTCTTCTTCCTCTTCTCTCTTCTCTTCCCATCCCTCATTTCCTCTTCCCCTGTTCACGACCCTGAATTGATAGTCCAAGAAGTAAACAGGAGAATCAATGAATCGATTGCTAGGAGGAACTTGGGCTACCTGTCATGTGGAAGCGGCAATCCGATCGACGATTGCTGGAGGTGCGATGGAGATTGGGAGAAGAACAGGCAGAAGCTCGCCGATTGCGCGATTGGCTTCGGGAAGAACGCGATCGGGGGAAGGAACGGCAAGATTTACGTGGTCACCGACTCCGGCGACGACAATCCGGTGAATCCGAAGCCGGGTACTCTGCGGCACGCGGTGATCCAAGACGAGCCGCTCTGGATCATATTCGCGAGGGACATGGTGATTCAGCTGAAGGAGGAGCTGATCATGAACTCCTTCAAGACGATCGACGGACGAGGAGCGTCCGTACACATTGCGGGTGGGCCCTGCATTACGATCCAGTACGTGACGAACATCATCATCCATGGGATTCACATACACGACTGCAAGCAGGGAGGGAATACTATGGTGCGGGACTCCCCACGGCACTACGGGTGGAGAACCGTATCGGACGGTGATGGCGTGTCCATCTTCGGAGGGAGCCACATATGGGTGGATCATTGCTCGTTGTCTAATTGTAACGACGGGCTGATCGATGCGATCCATGGGTCCACTGCGATTACCATCTCAAACAATTACATGACGCACCATGATAAGGTCATGTTGCTAGGTCACAGCGATTCCTACACTCAAGACAAGAACATGCAAGTCACCATTGCTTTCAACCACTTCGGGGAAGGTCTCGTTCAAAGAATGCCGAGGTGTAGACTGGGATACTTCCACGTGGTCAACAATGACTACACCCATTGGGAAATGTATGCCATTGGAGGAAGTGCTAACCCTACCATCAATAGCCAAGGCAACAGATTTGTGGCACCTGATAACCGATTCAGCAAAGAGGTGACAAAGCATGAGGATGCGGCAGAGAGTGAATGGAAGCATTGGAATTGGAGAACGGAAGGTGACTTGCTAGTAAACGGTGCGTTTTTCAGGCAATCTGGTGCTGGAGCCTCCTCTAGCTACGCAAGAGCTTCGAGCTTAAGCGCAAGACCATCTTCTCTCGTGGCTTCAATTACCATCAATGCTGGTACACTCAACTGTAAAAAAAGCTCTCCTTGCTGA 1209 0.5136 MTTLFFFLFSLLFPSLISSSPVHDPELIVQEVNRRINESIARRNLGYLSCGSGNPIDDCWRCDGDWEKNRQKLADCAIGFGKNAIGGRNGKIYVVTDSGDDNPVNPKPGTLRHAVIQDEPLWIIFARDMVIQLKEELIMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGIHIHDCKQGGNTMVRDSPRHYGWRTVSDGDGVSIFGGSHIWVDHCSLSNCNDGLIDAIHGSTAITISNNYMTHHDKVMLLGHSDSYTQDKNMQVTIAFNHFGEGLVQRMPRCRLGYFHVVNNDYTHWEMYAIGGSANPTINSQGNRFVAPDNRFSKEVTKHEDAAESEWKHWNWRTEGDLLVNGAFFRQSGAGASSSYARASSLSARPSSLVASITINAGTLNCKKSSPC 402
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2081 402 PANTHER PECTATE LYASE 18-RELATED 23 400 IPR045032 GO:0030570
Bisa08g2081 402 FunFam Pectate lyase 53 395 - -
Bisa08g2081 402 Gene3D - 53 395 IPR012334 -
Bisa08g2081 402 SMART amb_all 128 325 IPR002022 -
Bisa08g2081 402 SUPERFAMILY Pectin lyase-like 34 396 IPR011050 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 280 299 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 136 152 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 344 368 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 373 396 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 76 93 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 100 125 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 302 321 IPR018082 -
Bisa08g2081 402 PRINTS Pollen allergen Amb family signature 200 221 IPR018082 -
Bisa08g2081 402 Pfam Pectate lyase 138 319 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2081 Bisa-ChrBisa08 49901901 49904318 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2081 1 402 Polysaccharide Lyase AT5G63180 80.941 0.0 677