LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g2074	ATGTCTCTCACAACTATACCTTCGTTTAAGAACCTTACGACGGCAGAATCACGCATTCTCTCGTTGCCCTCCGTCATCTCCAACAAGACCAAATACCCTTTTATCTCTGTTCCATTCAAACCCCTTCAATTGCAAGTCTCATGCTCCAATTTCTCACTCTTCTCACCATCTCTGTCTATTTGCAGAAAACCCCACCATTTCTCTTTACTCACATTTGTAGCCCAGACTTCGGATTGGGCTCAACAGGAAGACAACACCGTCACTGTGGATGAAGAAGAAGCAGAACAAGAAGGACCCGCGTGGGAAAACCAAGAAGGGGATGACCCGGAAGCTCGTCTTTCGGATTGGGAGTCCGAGGGCGGAGAAGGCGAAGGAGAGAGAAGCGAAGATGAGTTTTTGAAGGATGGGGAATTTCCAGAACCACCTGAAGATGCCAAACTTTTTGTTGGGAATTTACCTTACGATGTTGACAGTCAGAGACTGGCCATGCTTTTTGAGCAGGCCGGTACGGTGGAAATCGCCGAGGTTATTTACAATAGGAGCACTGAACAAAGTCGTGGGTTCGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGAAAGCTGTAGAAAAGTTCAATCGCTATGATTTAGATGGAAGACTGTTGACTGTAAATAAGGCTGCTCCAAGAGGAACACAGCCCGAACGGGCACCTCGTACTTTTGAACCTTCCTTCAGAATCTATGCTGGCAATTTGCCATGGGATGTTGATAACAGTCGGCTGGAGCAGGTTTTCAGTGAACACGGCAAGGTTGTGAGTGCTCGGATAGTCTATGACAGAGAGACCGGTCGATCACGTGGATTTGGCTTTGTCACAATGTCCAGTGAGACTGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTTTGGATGGAAGGGCAATTAGAGTAAATGTTGCAGAGCAAAGGCCTAGGAGTGGATCCTTTTGA	975	0.4687	MSLTTIPSFKNLTTAESRILSLPSVISNKTKYPFISVPFKPLQLQVSCSNFSLFSPSLSICRKPHHFSLLTFVAQTSDWAQQEDNTVTVDEEEAEQEGPAWENQEGDDPEARLSDWESEGGEGEGERSEDEFLKDGEFPEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTEQSRGFGFVTMSTVEEAEKAVEKFNRYDLDGRLLTVNKAAPRGTQPERAPRTFEPSFRIYAGNLPWDVDNSRLEQVFSEHGKVVSARIVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEQRPRSGSF	324

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g2074	324	CDD	RRM1_PSRP2_like	146	225	-	-
	Bisa08g2074	324	Gene3D	-	73	227	IPR012677	-
	Bisa08g2074	324	Gene3D	-	228	322	IPR012677	-
	Bisa08g2074	324	PANTHER	OS02G0815200 PROTEIN	31	318	-	-
	Bisa08g2074	324	MobiDBLite	consensus disorder prediction	85	104	-	-
	Bisa08g2074	324	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	147	216	IPR000504	GO:0003723
	Bisa08g2074	324	Pfam	RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)	241	311	IPR000504	GO:0003723
	Bisa08g2074	324	CDD	RRM2_NsCP33_like	240	315	-	-
	Bisa08g2074	324	SUPERFAMILY	RNA-binding domain, RBD	141	230	IPR035979	GO:0003676
	Bisa08g2074	324	MobiDBLite	consensus disorder prediction	105	142	-	-
	Bisa08g2074	324	FunFam	31 kDa ribonucleoprotein, chloroplastic	74	228	-	-
	Bisa08g2074	324	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	145	223	IPR000504	GO:0003723
	Bisa08g2074	324	SMART	rrm1_1	240	313	IPR000504	GO:0003723
	Bisa08g2074	324	SMART	rrm1_1	146	219	IPR000504	GO:0003723
	Bisa08g2074	324	MobiDBLite	consensus disorder prediction	82	146	-	-
	Bisa08g2074	324	FunFam	31 kDa ribonucleoprotein, chloroplastic	229	323	-	-
	Bisa08g2074	324	ProSiteProfiles	Eukaryotic RNA Recognition Motif (RRM) profile.	239	317	IPR000504	GO:0003723
	Bisa08g2074	324	SUPERFAMILY	RNA-binding domain, RBD	232	321	IPR035979	GO:0003676

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g2074	Bisa-ChrBisa08	49815395	49817867	Dispersed/Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g2074	143	318	Eukaryotic Initiation Factors Gene Family	AT3G16380	34.054	7.98e-23	97.1

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Bisa08g2074	08	49815395	49817867	Bisa02g1211	02	20276730	20278479	CCT
	Bisa08g2074	08	49815395	49817867	Bisa02g1211	02	20276730	20278479	ECH
	Bisa08g2074	08	49815395	49817867	Bisa08g2074	08	49815395	49817867	ECH