Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2072 ATGTCTCTCACAACTATGCCTTCTTTTAAGACCCTTACGACGGCAGAATCACGCATTCTCTCGTTGCCCTCCGTCATCTCCAGCAAAACCAAATACCCTGTTATCTCTGTTCCATCCAAACCCCTTCAATTGCAAGTCTCATGCTCCAATTTCTCACTCTTCTCACCATCTCTGTCTATTTGCAGAAAACCCCACCATTTCTCTTTACTCACATTCGTAGCCCAGACTTCGGATTGGGCTCAACAGGAAGACAACACCGTCACTGTGGATGAAGAAGAAGCAGAACAAGAAGGACCCGCGTGGGAAAACCAAGAAGGGGATGACCCGGAAGCTCGTCTTTCGGATTGGGAGTCCGAGGGCGGCGAAGGCGAAGGAGAGCGAAGCGAAGATGAATTTTTTAAGGATGGGGAATTTCCAGAACCACCTGAAGATGCCAAACTTTTTGTTGGGAATTTACCTTACGATGTGGACAGTCAGAGACTGGCCATGCTTTTTGAGCAGGCCGGTACGGTGGAAATCGCCGAGGTTATTTACAATAGGAGCACTGACCAAAGTCGTGGGTTCGGATTTGTGACGATGAGTACTGTTGAAGAAGCTGAGACAGCTGTAGAAAAGTTCAATCGCTATGATTTAGATGGAAGACTGTTGACTGTAAATAAGGCTGCTCCAAGAGGAACACAGCCCGAACGGGCACCTCGTACCTTTGAACCTTCCTTCAGAATCTACGCTGGCAATTTGCCATGGGATGTCGATAACGGTCGGCTGGAGCAGGTTTTTAGTGAACACGGCAAGGTTGTGAGTGCTCGGATAGTCTATGACAGAGAGACCGGTCGATCACGTGGGTTTGGCTTTGTCACAATGTCCAGTGAGACTGAAATGAATGATGCCATTGCTGCTCTTGATGGTCAGAGTCTGGATGGAAGGGCAATTAGAGTAAATGTTGCAGAGGAAAGGCCTAGGCGTGGATCCTTTTGA 975 0.4821 MSLTTMPSFKTLTTAESRILSLPSVISSKTKYPVISVPSKPLQLQVSCSNFSLFSPSLSICRKPHHFSLLTFVAQTSDWAQQEDNTVTVDEEEAEQEGPAWENQEGDDPEARLSDWESEGGEGEGERSEDEFFKDGEFPEPPEDAKLFVGNLPYDVDSQRLAMLFEQAGTVEIAEVIYNRSTDQSRGFGFVTMSTVEEAETAVEKFNRYDLDGRLLTVNKAAPRGTQPERAPRTFEPSFRIYAGNLPWDVDNGRLEQVFSEHGKVVSARIVYDRETGRSRGFGFVTMSSETEMNDAIAALDGQSLDGRAIRVNVAEERPRRGSF 324
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2072 324 CDD RRM1_PSRP2_like 146 225 - -
Bisa08g2072 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 239 317 IPR000504 GO:0003723
Bisa08g2072 324 MobiDBLite consensus disorder prediction 85 104 - -
Bisa08g2072 324 Gene3D - 228 323 IPR012677 -
Bisa08g2072 324 Gene3D - 73 227 IPR012677 -
Bisa08g2072 324 MobiDBLite consensus disorder prediction 82 140 - -
Bisa08g2072 324 PANTHER OS02G0815200 PROTEIN 28 319 - -
Bisa08g2072 324 SUPERFAMILY RNA-binding domain, RBD 141 230 IPR035979 GO:0003676
Bisa08g2072 324 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 145 223 IPR000504 GO:0003723
Bisa08g2072 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 241 311 IPR000504 GO:0003723
Bisa08g2072 324 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 147 216 IPR000504 GO:0003723
Bisa08g2072 324 CDD RRM2_NsCP33_like 240 315 - -
Bisa08g2072 324 SMART rrm1_1 240 313 IPR000504 GO:0003723
Bisa08g2072 324 SMART rrm1_1 146 219 IPR000504 GO:0003723
Bisa08g2072 324 SUPERFAMILY RNA-binding domain, RBD 232 322 IPR035979 GO:0003676
Bisa08g2072 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 74 228 - -
Bisa08g2072 324 MobiDBLite consensus disorder prediction 105 140 - -
Bisa08g2072 324 FunFam 31 kDa ribonucleoprotein, chloroplastic 229 323 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2072 Bisa-ChrBisa08 49807875 49810396 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2072 143 321 Eukaryotic Initiation Factors Gene Family AT3G16380 33.511 4.74e-22 94.7