Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g2020 ATGAACCCTCACGACAGCAGATTTATGGACTCAACTTCTTATCGCGAACGTCTGAGTGATTTAGTTGCATCTCTGCCGCTGATGGTGCCTCTAATGAATGGCGGTGCGAGCTACGGCCGTGGTGGTCCTGTTCCTTACGGTCCTCCGCCGGTAGGATATAACATGGGTGGAAGAGGAGCTGGGAGTGCTCTTGGGACGGTAGCGGCTGCCCCAAATTATAATGCGCTGCCGCCGTTCATGCCGCCTCCTGGAGGTTTTGACATAGGTCTAGGCGGTGGGAGCAGCCAAGGGGGCTTCAATGGTAGACTGGGCAATGGCCATGTTGGTGGTACAAAAGATGACGTAGGTCGTCGAAGTAGTGGAAGAGATCGTAGTAGCGGTTCGATTGCAGAGAGGGGTCGTGGTAAATCTGGTGGATCTCGCGGTAAGAAGACCTCGGGAAGAGGAGGGGCTGGAGGTAAAAGTGTTGGTGGAAGTGCCGGATTTGGGAGCAACCGAGGCCATGGTCGTCGTGGTGGTGGCAGAGGAGGAAGACGTGGTGGATCTTCCAGAGATGACTTGGACAACATCGCACTTCCCAAGCAAGATTTTACAAATTTGGTTCCCTTTGAGAAGAATTTTTACATTGAGAGCCCATCGGTGCTGGCGATGTCTGATTATGAGATTAATGCTTATCGTGCCAGTAGAGAGATCACAGTGCAAGGGCTTGACGTTCCAAAACCAATTCGGATGTTTCAAGAGGCAAATTTCCCTGATTACTGCCTCGAGGTGATTGCCAAATTGGGTTTTGTTGAGCCTACTCCAATTCAGGCTCAGGGTTGGCCCATGGCTCTGAAGGGTAGAGATTTGATTGGCATTGCTGAGACTGGCTCGGGAAAAACACTCGCATATTTGCTTCCTGCTTTAGTGCATGTCAGAGCACAACCTCAATTGGTGCAAGGTGAGGGTCCCATTGTCTTAATTCTGGCACCAACTAGGGAGTTAGCCGTTCAAATTCAACAAGAAGCTTTAAAATTTGGTTCACTTGCGAATATTAGAACTACTTGCGTCTATGGCGGTGCGCCAAAGGCGCCACAAATTCGTGATCTTAAAAGAGGTGTTGAGATTGTTATTGCCACACCTGGTCGCCTAATAGATATGTTGGAAGCTCGGCACACAAATCTGCAAAGAGTGACTTACCTTGTGTTGGATGAAGCAGATCGAATGCTGGACATGGGCTTTGAACCTCAGATACGGAAAATTGTAGGGCAGATACGACCTGATAGGCAGACATTGTACTGGAGTGCAACGTGGCCACGGGAGGTTGAAACTCTAGCAAGGCAGTTCCTACGCAATCCGTATAAGGTAACGATCGGATCACAAGATCTGAAGGCAAATCAATCTATAAATCAAGTCGTTGAAGTTGTAATGGAAGAGGAGAAATACGATAGATTGATCAGATTGCTCAAGGAAGTGATGGATGGCAGTAGAATTCTGATATTTATGGAGACAAAAAGGGGTTGTGACGAAGTTACAAGACAATTGAGAATGGATGGCTGGCCTGCACTATCCATCCATGGTGATAAAAACCAGGGCGAAAGGGACTGGGTCTTGGCTGAATTTAAGAGTGGAAGAAGTCTGATAATGACTGCCACTGATGTTGCTGCGCGCGGTCTTGATGTGAAGGACATAAAGTGTGTGATCAATTATGATTTTCCTTCAAGCCTGGAGGATTATGTCCACAGAATTGGTCGAACTGGTCGTGCAGGAGCCAAAGGAACTGCCTACACCTTTTTCACACGCGCAAATGCCAGGTTTGCCTTGGAGCTGATCAAGATCTTGCAAGATGCTGGCCAGATTGTGAATCCTGCTCTATCTGCCTTGACTCGATCAGCCGGTTCTGGTCAATTTGGATCTTCTGGAGGAAATATCCACTCCAGAGGACGGGGAGGTGGCAATCGGGCTCAATTGACAGGATCCAATTCCATTCCTCTAGGTTCGAATAAGCCTTGGTAG 1995 0.4842 MNPHDSRFMDSTSYRERLSDLVASLPLMVPLMNGGASYGRGGPVPYGPPPVGYNMGGRGAGSALGTVAAAPNYNALPPFMPPPGGFDIGLGGGSSQGGFNGRLGNGHVGGTKDDVGRRSSGRDRSSGSIAERGRGKSGGSRGKKTSGRGGAGGKSVGGSAGFGSNRGHGRRGGGRGGRRGGSSRDDLDNIALPKQDFTNLVPFEKNFYIESPSVLAMSDYEINAYRASREITVQGLDVPKPIRMFQEANFPDYCLEVIAKLGFVEPTPIQAQGWPMALKGRDLIGIAETGSGKTLAYLLPALVHVRAQPQLVQGEGPIVLILAPTRELAVQIQQEALKFGSLANIRTTCVYGGAPKAPQIRDLKRGVEIVIATPGRLIDMLEARHTNLQRVTYLVLDEADRMLDMGFEPQIRKIVGQIRPDRQTLYWSATWPREVETLARQFLRNPYKVTIGSQDLKANQSINQVVEVVMEEEKYDRLIRLLKEVMDGSRILIFMETKRGCDEVTRQLRMDGWPALSIHGDKNQGERDWVLAEFKSGRSLIMTATDVAARGLDVKDIKCVINYDFPSSLEDYVHRIGRTGRAGAKGTAYTFFTRANARFALELIKILQDAGQIVNPALSALTRSAGSGQFGSSGGNIHSRGRGGGNRAQLTGSNSIPLGSNKPW 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g2020 664 Gene3D - 216 451 IPR027417 -
Bisa08g2020 664 SMART ultradead3 262 465 IPR014001 -
Bisa08g2020 664 FunFam ATP-dependent RNA helicase RhlB 453 625 - -
Bisa08g2020 664 MobiDBLite consensus disorder prediction 86 189 - -
Bisa08g2020 664 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 243 271 IPR014014 GO:0003724
Bisa08g2020 664 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 222 620 - -
Bisa08g2020 664 SMART helicmild6 502 583 IPR001650 -
Bisa08g2020 664 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 395 403 IPR000629 -
Bisa08g2020 664 Gene3D - 452 625 IPR027417 -
Bisa08g2020 664 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 274 449 IPR014001 -
Bisa08g2020 664 CDD SF2_C_DEAD 462 592 - -
Bisa08g2020 664 CDD DEADc_DDX5_DDX17 255 450 - -
Bisa08g2020 664 MobiDBLite consensus disorder prediction 646 664 - -
Bisa08g2020 664 Pfam Helicase conserved C-terminal domain 473 583 IPR001650 -
Bisa08g2020 664 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 316 599 IPR027417 -
Bisa08g2020 664 MobiDBLite consensus disorder prediction 111 130 - -
Bisa08g2020 664 FunFam probable ATP-dependent RNA helicase DDX17 205 452 - -
Bisa08g2020 664 MobiDBLite consensus disorder prediction 627 664 - -
Bisa08g2020 664 Pfam DEAD/DEAH box helicase 267 438 IPR011545 GO:0003676|GO:0005524
Bisa08g2020 664 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 477 622 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g2020 Bisa-ChrBisa08 48588172 48592156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g2020 240 612 Eukaryotic Initiation Factors Gene Family AT3G19760 36.729 5.10e-69 229