Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1993 ATGGAGAACCTGTTCGGCTTCCACGGCGCCACCGGTTACTCCGAGCAGTCACCGATGGCTCCCTCATTACAACCAACCGGTCTCCAGGACTCCGCGCCACAGTCACACCACATGGTTCCGCTAGATTGGACATCAGCAACTGGACCTTACCAATTTGCTCGGTCCGGTTCTTCTTCATCGGCGGCAATATCGGATACTCCGTCATCAGTGGTGGCGGAGGTTCAGAGAGGGGAAACTAGCCTGGAGGAGGAGGAGGAGGAAGTTTCTAGAGAGCTTCGCGCTAAAATCGCTTGTCATCCTCTTTATCCTAAACTACTAGAGGCCTACATCGATTGCCAGAAGGTGGGAGCGCCGCCGGAGACAGCGAACCTATTAGATGAAATCGGACGAGAGAGTGGCGATCTGTGTCAGAGATCTGCTTGCTTGGGTGCTGATCCCGAGCTCGACGAATTCATGGAAACGTATTGCGATTTATTGGTGAAATACAAATCGGATCTCTCGAAGCCTTTTGATGAGGCAACCGCATTTCTTAACGACATGGAAACACAGCTTAACACCGTCTGCAACGGCGCTTGCCGAAACTACGGTCCTGCTGATGGTACTGGATCATCCGAAGAGGACATCAGTGGAGAAGAGAAAGAGGAAAACGAGTTTAGGAGGATCCATGAAGATCGAGAGCTGAAGGATAAGCTTCTACGTAGATATAGTGGCTATATTAGCAGTCTAAAGCATGAATTCTCTAAAAAGAAGAAGAAAGATAAGCTACCCAAAGAAGCAAGACAAACATTACTTGCATGGTGGAATATTCACTTCAAATGGCCATACCCGACGGAAGCGGATAAGGTTGCCTTAGCTGAATGGACTGGTCTAGATCAGAAGCAGATAAACAATTGGTTTATAAACCAAAGGAAGCGCCATTGGAAACCAACGGAGGAAATGCAAGCTGCTGTTTTGGATGGCATCTATGGCCCTTTTTCCACGAGTTGTTGA 990 0.4859 MENLFGFHGATGYSEQSPMAPSLQPTGLQDSAPQSHHMVPLDWTSATGPYQFARSGSSSSAAISDTPSSVVAEVQRGETSLEEEEEEVSRELRAKIACHPLYPKLLEAYIDCQKVGAPPETANLLDEIGRESGDLCQRSACLGADPELDEFMETYCDLLVKYKSDLSKPFDEATAFLNDMETQLNTVCNGACRNYGPADGTGSSEEDISGEEKEENEFRRIHEDRELKDKLLRRYSGYISSLKHEFSKKKKKDKLPKEARQTLLAWWNIHFKWPYPTEADKVALAEWTGLDQKQINNWFINQRKRHWKPTEEMQAAVLDGIYGPFSTSC 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1993 329 MobiDBLite consensus disorder prediction 1 42 - -
Bisa08g1993 329 SMART KNOX2_2 138 189 IPR005541 GO:0003677|GO:0005634
Bisa08g1993 329 ProSiteProfiles ELK domain profile. 226 246 IPR005539 GO:0003677
Bisa08g1993 329 CDD homeodomain 258 309 IPR001356 GO:0003677
Bisa08g1993 329 MobiDBLite consensus disorder prediction 54 75 - -
Bisa08g1993 329 SMART KNOX1_2 90 134 IPR005540 GO:0003677|GO:0005634
Bisa08g1993 329 SMART ELK_2 226 247 IPR005539 GO:0003677
Bisa08g1993 329 Pfam KNOX2 domain 142 188 IPR005541 GO:0003677|GO:0005634
Bisa08g1993 329 Pfam Homeobox KN domain 266 305 IPR008422 GO:0003677|GO:0006355
Bisa08g1993 329 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 38 315 - -
Bisa08g1993 329 Pfam ELK domain 226 247 IPR005539 GO:0003677
Bisa08g1993 329 Gene3D - 243 317 - -
Bisa08g1993 329 SMART HOX_1 248 313 IPR001356 GO:0003677
Bisa08g1993 329 MobiDBLite consensus disorder prediction 15 41 - -
Bisa08g1993 329 ProSiteProfiles 'Homeobox' domain profile. 246 309 IPR001356 GO:0003677
Bisa08g1993 329 MobiDBLite consensus disorder prediction 54 86 - -
Bisa08g1993 329 ProSitePatterns 'Homeobox' domain signature. 284 307 IPR017970 GO:0000981|GO:0006355
Bisa08g1993 329 Pfam KNOX1 domain 92 132 IPR005540 GO:0003677|GO:0005634
Bisa08g1993 329 SUPERFAMILY Homeodomain-like 248 321 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1993 Bisa-ChrBisa08 47867167 47887127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1993 1 327 Homeobox Transcription Factor Family AT1G23380 51.744 6.79e-107 313
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-KNOX Bisa08g1993 KNOX2 1.1e-23 No_clan