Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1965 ATGATTCTATTTGCAGATAAAAAGTTTCGAGCCAGCAATAGCTCAAACTGTACAGTTAAGGTAGACAGCAGAAATGAACTCCAGAATTTGATATGCGCTAAAGGTTTCCCAAAATTGTTTTCCTACCATGGCAATCAGAGGCATCGATTTCAAGTGGTTGGTCTCAATCCTATGTTATCTGCGTTTCTGCTTTTGTGCATTTCTGGTGTGATTATGCCAGCAATTGTATCCGAATTATATATGAAACTCGATGCTTTTGCTTGCAGGTACGATGGGTTTTTCTTATCGATGCTCGCCACCAGCATAGCTATTGTTGCAATCAACTGGAAGCGGTACCATTCTTGTACATACCCGTTGCATATATGGATTGTGGTTGACTACACTGCTGTTTTTATTTTTCGGCTGCTGATGTTTGTTGATAATGGACTTGCTGCAGGAATGGGTTTAGATTTTGGGTGGCAGCAGAGGTATGCTCGTTTCTGTGGAAGAGTAGTAGTCCTTTCAATCCTTTCTTTGCTTCTCTATCCATTTCTTTGGGCTTGGACTATAACTGGTACCCTTTGGTTCAGCAGTGCCAAGAACTGCTTGCCTGAAGAGGGTCAGAAATGGGGCTTCCTCATCTGGTTACTTTTTAGCTTCTGTGGACTCCTTTGTATTGCTTTCATGTGCCTGGGAAAGTGGTTGACACGAAGACAAGCACACTTGATGCGTGCACAGGGTATTCCTGTATCTGAATATGGGGTTTTGATTGACATGATTCGAGTTCCTGATTGGGCACTTGAAGCTGCAGGCCAAGAAACAAGAGGCATGGGTCAGGATGCTGCTGCATATCAACCTGGAATTTACCTAACTCCAGCTCAGAGAGAAGCAGTTGAAGCATTAATTCAGGAACTCCCCAAGTTCAGTTTAAAAGCTGTTCCAACTGATTGCAGTGAATGCCCCATCTGCTTAGAAGAGTTCCGTGTAGGGAATGAGGTCCGTGGCCTGCCTTGTGCTCACAATTTTCATGTTGAATGCATTGATGAGTGGCTTCGACTGAATGTGAAATGCCCTCGGTGCCGTTGCTCAGTATTTCCAAATCTTGACCTCAGTGCTCTGTCTAATCTCCGGGCTGATTTAGAACGATCATCTGCCAGTGTTGTAACAACAACCAGATATGTGCGAAGTCAGCCTTCCAGTCAGAGTTATCTGTTAAGATTACAGGGACTTCTCCGCCCAGTGCGCACAGAAATTGCAGGGCCACATGGTGGCAGGGACAATGTTTTGGATAATTCTGAGAGTAGTGTTTCACCTGTGGTGACTCGAAATCCACCAACAGGAGTCCAGTTCCTTTCAGTTGAATGCATGCCTGTCCGTCTTTACCCTGCACAAAACTAG 1377 0.4466 MILFADKKFRASNSSNCTVKVDSRNELQNLICAKGFPKLFSYHGNQRHRFQVVGLNPMLSAFLLLCISGVIMPAIVSELYMKLDAFACRYDGFFLSMLATSIAIVAINWKRYHSCTYPLHIWIVVDYTAVFIFRLLMFVDNGLAAGMGLDFGWQQRYARFCGRVVVLSILSLLLYPFLWAWTITGTLWFSSAKNCLPEEGQKWGFLIWLLFSFCGLLCIAFMCLGKWLTRRQAHLMRAQGIPVSEYGVLIDMIRVPDWALEAAGQETRGMGQDAAAYQPGIYLTPAQREAVEALIQELPKFSLKAVPTDCSECPICLEEFRVGNEVRGLPCAHNFHVECIDEWLRLNVKCPRCRCSVFPNLDLSALSNLRADLERSSASVVTTTRYVRSQPSSQSYLLRLQGLLRPVRTEIAGPHGGRDNVLDNSESSVSPVVTRNPPTGVQFLSVECMPVRLYPAQN 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1965 458 PANTHER E3 UBIQUITIN-PROTEIN LIGASE SIS3 89 436 IPR044793 GO:0004842|GO:0010182
Bisa08g1965 458 SMART ring_2 313 353 IPR001841 -
Bisa08g1965 458 ProSiteProfiles Zinc finger RING-type profile. 313 354 IPR001841 -
Bisa08g1965 458 SUPERFAMILY RING/U-box 294 362 - -
Bisa08g1965 458 FunFam E3 ubiquitin-protein ligase SIS3 281 359 - -
Bisa08g1965 458 Pfam Ring finger domain 312 354 IPR001841 -
Bisa08g1965 458 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 282 359 IPR013083 -
Bisa08g1965 458 MobiDBLite consensus disorder prediction 414 434 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1965 Bisa-ChrBisa08 47256209 47261535 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1965 137 439 C3H Transcription Factor Family AT3G47990 71.429 6.12e-155 439