Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1962 ATGAAGAAATCAAGCGGTGACCCTTCTTCCAAAGTTGATCGCAAAACTGTTGAAAGAAACCGCAGAATCCACATGAAAGCTCTCTGTTTTAAGCTCGCTTCCCTCATCCCTCCCCACTACTTAAGACAGACCAAGGACATGATATCGCAGCAGGATCAGTTGGATACGGCGGCGAGCTACATAAGGAATCTGAGGGACAAACTGGAGAAGCTGAAGGGGCGTAAGGAGGAGGCGATGAGGTCGAAGGAATTATCGAATGGTAACAGTGGGATTGAGAACATGTTGATGGGGGCCAACCTCCCTGTGCTGGAGCTCAGAGACATGGGTTCCAGCATCGAAGTTATGCTGATCAGTGGCTTGACCAGGAACTTCATGTTGTACGAGGTTATCAGTGTGCTCGAGGAAGAAGGCGCCGAGGTTGTCAATGCCAGCTTCTCCACTGTCGGAGACAAGATATTCCACACTGTTCATGCCCAGGTGAAAATATCAAGAGTGGGAGTGGAGACGACAAGGGTGCATCAGAGGCTTCAGGAGTTGATCGCGCCACTAAGAAGCTGGGAGTATTTTTAA 570 0.4947 MKKSSGDPSSKVDRKTVERNRRIHMKALCFKLASLIPPHYLRQTKDMISQQDQLDTAASYIRNLRDKLEKLKGRKEEAMRSKELSNGNSGIENMLMGANLPVLELRDMGSSIEVMLISGLTRNFMLYEVISVLEEEGAEVVNASFSTVGDKIFHTVHAQVKISRVGVETTRVHQRLQELIAPLRSWEYF 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1962 189 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 8 179 - -
Bisa08g1962 189 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 12 80 IPR036638 GO:0046983
Bisa08g1962 189 Coils Coil 54 81 - -
Bisa08g1962 189 Gene3D - 2 91 IPR036638 GO:0046983
Bisa08g1962 189 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 9 64 IPR011598 GO:0046983
Bisa08g1962 189 SMART finulus 15 70 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1962 Bisa-ChrBisa08 47179327 47180087 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1962 4 180 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G20970 35.676 5.95e-30 107
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa08g1962 None None None
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1962 08 47179327 47180087 Bisa08g1962 08 47179327 47180087 ECH