Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1959 ATGATTCATAAATCTACTCCAAGTGACCGTCGTGTTCTCTCATTCCCCGCAGTATTCCCCTGCGAAGCCGTCTCTCTCTCGACCCTCCTCGCATCTCTCATCTCCCTCTCTCACAACATCTGCAATTTCCAATCTTGCTCCTTCTCCACTCATCGCCGAAACGCCAGAGAGATCATCCGCCAGGTGGGTGTCATCCTCATTTTCCTCGAGGAAATTCGAGACCGTGGGTTCGACTTCGCAAGCCCCCAGGAATCTTTTATGCTTTCTTTGGCGGAGCTCCACTTGAGTTTCCAGAAAATCCAGTTCTTGCTCGAGGACTGCACACGCGAGGGTGCTCGGCTATGGATGCTGATGAAATCCCACGACGTCGCCACGCAAGCTCGCGTTCTGATTCGCGGCGTCGCCACCTCTCTCGACGTCTTGCCACTCCATCGGGTTGAGGTCTGCGGCGAAGTGAAAGAGTTAGTGGAGTTAGTCGCGAAGCATGCTCGGCGGGTGAAGTTCGAACCCGACCCGGAGGATGAAAGAACCGGAAAAAGAGTTGATTCGGTTCTGCGCCAGCTGGAGAGGGGAATCGAACCGGACTTAATCACCATAAAGCAAATCCTCGATTATTTAGAGATAAAAACCTGGAATGACTGTAATAGAGAGATCAAATTCTTAGAAGAGGAAGTCGATTCGGAAAGCGCTGAATGCCGGGAGCGAGGGGTTCCGTTTCTGAGTAGCTTAATCGGCTTCTTGTGTTACTGCAGGGGAGTGGTATTCGAAACTTTGGATTTCAGAAACGACAGTGATCCCTCAGAAGAAAGGTGTAGTACAGAGTTGATCAATTTCATAAACCCAGAAGATTTCCGATGCCCCATTTCGCTGGAGCTTATGACCGACCCAGTGACTGTATCAACAGGTCAGACTTACGATCGAGCTTCGATTCAGAAATGGCTAAAATCAGGAAACAGAATTTGCCCCAAAACAGGGGAGAAGCTGGAGACTACAGAGTTGTTCCCGAACACGACGCTTCGGAAGCTAATCCAGCAATTCTGCGCCAACAAAGGCGTCTCCCTCGCAAAACTGACCAATCCATCTCGCGACATTGGGAAAACCGTCCTCCCAGGAAGCCCAGCATTCGCTCACGCCATTCAATTTCTGTCCTGGTTTCTCGCTCGGAGGCTCGTGTTTGGCACTTGCGACCAGAAGAACAAAGCGGCTTACGAGATTCGTTTGCTCGCAAGGTCAAATATTTTCAACCGCTCGTGTTTGATCAAAGTGGGAATAGTGTCCCCTTTATTAAACATTCTGGAATTTAACGACAAATCCACTCAGGAGAACGCCATTGCTGCCCTATTGAAGCTCGCGAAGCATAACAGAGGGAAGGAAGCCATATTGGAAAACGGAGGTCTAACTCCCATTATAAACGTCCTCAAAAGAGGAGTAAGTCTTGAATCACGCCAAAATGCAGCTGCTACTATATTCTATCTTGCTTCAGTGAAACAGTACAGAAAATTAATCGGAGAGAACCCAGAGACAATTCCGTGTTTAGTAGAACTAACCAAGGAGGGAACAGCCTGTGGGAAGAGGAACGCCATGGTTGCGATCTTCGGGCTTCTCTTAATTCCCAAGAATCACCAGAGAGCGATTCAAGCTGGGGCTATTCCTGCGCTTATTGATATCTTATCCTCTTCAGAGAAGGCTGACCTTGTGACAGATTCGTTGGCTGTTCTTGCTGCCTTATCGGAGAACAGAGAAGGAGCAGAGGCTATACTGAAAGCTTCGGCTTTGCGTTTGATAATTGGGGTTCTAAAATCTGCGACGAGGCATGCAGGGAAGGAACACTGCGTTTCGATTCTGCTGTCGCTCTGTGTGAACGGAGGAGAAGAGGTGGTGAGCGTGGTGGCGAAAGAGGGCTCGGTGATGCCGTTGTTGTATTCGGTCCTTGAAGATGGAACTTGCAATGCGGGGAAGAAAGCGAGGTTTCTCATCCGAATTTTGCAGGATTTTCTCGAGAAATCAACTTCTTCTTCACTTCACGTGCGGTAG 2034 0.4912 MIHKSTPSDRRVLSFPAVFPCEAVSLSTLLASLISLSHNICNFQSCSFSTHRRNAREIIRQVGVILIFLEEIRDRGFDFASPQESFMLSLAELHLSFQKIQFLLEDCTREGARLWMLMKSHDVATQARVLIRGVATSLDVLPLHRVEVCGEVKELVELVAKHARRVKFEPDPEDERTGKRVDSVLRQLERGIEPDLITIKQILDYLEIKTWNDCNREIKFLEEEVDSESAECRERGVPFLSSLIGFLCYCRGVVFETLDFRNDSDPSEERCSTELINFINPEDFRCPISLELMTDPVTVSTGQTYDRASIQKWLKSGNRICPKTGEKLETTELFPNTTLRKLIQQFCANKGVSLAKLTNPSRDIGKTVLPGSPAFAHAIQFLSWFLARRLVFGTCDQKNKAAYEIRLLARSNIFNRSCLIKVGIVSPLLNILEFNDKSTQENAIAALLKLAKHNRGKEAILENGGLTPIINVLKRGVSLESRQNAAATIFYLASVKQYRKLIGENPETIPCLVELTKEGTACGKRNAMVAIFGLLLIPKNHQRAIQAGAIPALIDILSSSEKADLVTDSLAVLAALSENREGAEAILKASALRLIIGVLKSATRHAGKEHCVSILLSLCVNGGEEVVSVVAKEGSVMPLLYSVLEDGTCNAGKKARFLIRILQDFLEKSTSSSLHVR 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1959 677 Gene3D - 534 673 IPR011989 -
Bisa08g1959 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 423 465 IPR000225 GO:0005515
Bisa08g1959 677 FunFam RING-type E3 ubiquitin transferase 280 352 - -
Bisa08g1959 677 Pfam U-box domain 281 350 IPR003613 GO:0004842|GO:0016567
Bisa08g1959 677 PANTHER U BOX DOMAIN-CONTAINING 54 662 - -
Bisa08g1959 677 SMART Ubox_2 283 346 IPR003613 GO:0004842|GO:0016567
Bisa08g1959 677 FunFam RING-type E3 ubiquitin transferase 361 673 - -
Bisa08g1959 677 Coils Coil 211 231 - -
Bisa08g1959 677 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 280 354 IPR013083 -
Bisa08g1959 677 Pfam Armadillo/beta-catenin-like repeat 415 451 IPR000225 GO:0005515
Bisa08g1959 677 ProSiteProfiles U-box domain profile. 279 353 IPR003613 GO:0004842|GO:0016567
Bisa08g1959 677 Gene3D - 391 533 IPR011989 -
Bisa08g1959 677 SUPERFAMILY ARM repeat 396 662 IPR016024 -
Bisa08g1959 677 SMART arm_5 453 494 IPR000225 GO:0005515
Bisa08g1959 677 SMART arm_5 411 452 IPR000225 GO:0005515
Bisa08g1959 677 SMART arm_5 537 578 IPR000225 GO:0005515
Bisa08g1959 677 SUPERFAMILY RING/U-box 281 353 - -
Bisa08g1959 677 CDD RING-Ubox_PUB 281 333 IPR045210 -
Bisa08g1959 677 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 548 591 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1959 Bisa-ChrBisa08 47091703 47093736 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1959 1 672 U-box Gene Family AT1G10560 41.339 4.36e-174 511
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1959 08 47091703 47093736 Bisa08g1959 08 47091703 47093736 ECH