Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1926 ATGGGTGGTGGCAATGGCAAGCGCAGGTGGAAAATCTCCTTCCATCGTTCTTCATCTTCTTCTTCTGATTCCAAGCTCGAACGTAAGCACCCTCCCAAGGAGTTTCTCTGTCCAATTTCTGGATTTTTCATGTCCGACCCGGTTGTTGTTGCTTCGGGTCACACATTCGAACGGGTTTCTGTTCAGGTTTGCACAGATTTGAGGTTCTCACCGAAACTCGAAGATGGGTCCCGACCCGAATTCTCCACCGTCATTCCCAATTTGGCCCTCAAAACCACCATCTCCAGTTGGTGCAGAAGCTCCGGTGTGGAGCTTCCTCAGGAACCTGATTACAGCTCCGTCGAGAGGGTTGTGCGTTCATCAATGGCGTCCCAGCAGGGGTCGCCGGAATTTAGGGTTTCGGAGAGGGAATTGCTTAAGGCGGTGGCGGATAACCCGCCGGTGATTTTCTCCCATGCTGCCACCGAGTTGGGTCCCCGAGTTAACCACTTCGACTCGAGCTCGTCGGAGGAATCGGTGATCATCGTGCCCAGTCCCGGCACCCCTCTGCCACTAACCACTCGTCCAACCTGTTACTCCTCGTCGTCGTCTTCTTCAATTACGGCCGATTGCGACATACAAAACCCTAATGGCCCAGTTTCCGAGGAGGAGGACAAATTGGTCTCGAAGCTGAGGAGCAGCGAGATTTTCGAGCAAGAGGAAGCCGTTATTTCACTGAGAAGCATCACGAGGAACAGAGAGGACACCAGAATTTCTCTCTGCACCCCTCGATTGCTCTCAGCCCTACGATCCTTGATTGACTCGAGGTACACCATCGTGCAAGTAAACGCCGTCGCTTCGCTGGTCAACCTCTCTCTTGAGAAATCCAACAAGGTGAAGATCGTACGGGCGGGATTCGTCCCGCATCTCATCGACGTCTTGAAAGGAGGATCCGATGAATCGCAGGAACACGCCGCCGGCGCGCTCTTCAGCTTAGCCCTGAACGACAATAACAAAATGGCCATCGGAGTTCTCGGCGCGTTGCAGCCGCTCATGCACGCGCTTCGGTCCGAGTCGGAGCGGACCCGGCACGACTCGGCGCTCGCGCTGTACCACCTGAGCTTGGTTCAGAGCAACCGAGTCAAGCTCGTGAAACTCGGGGCGGTTCCGACCCTACTAGCAATGGCGAAATCGGGCAAATCGGCCGGGCGGGTCTTGCTGATTCTGTGCAATCTCGCGGTGTGCACGGAGGGCCAGTCGGCGATGCTGGACGGAGATGCAGTGGAGTGCTTGGTGGGTTTGTTGAGGGGGAACGAGTTGGACTCCGAGTCGACTCGGGAGAACTGTGTGGCTGCGTTGTACTCGCTCAGCCATGGGAGCATGAGGTTCAAAGCGTTGGCGAAGGAGGCAAGGGCTATGGAGGTGTTGAAGGAGATTGAAGAGAGGGGAACAGAGAGAGCCAGAGAGAAGGCGAAGAGAATAGTGCAGATGATGAGGGCAGGAGGAGAAGAGGATGAAGACGGAACCGGGTCTAACCTTGAATCAGCTGGGTTGAATCGGACTCGGTTCCGAGTTGGGAATGGGAGGAATATCAACATTGCGAACTCAACTGCATTCTAG 1599 0.5516 MGGGNGKRRWKISFHRSSSSSSDSKLERKHPPKEFLCPISGFFMSDPVVVASGHTFERVSVQVCTDLRFSPKLEDGSRPEFSTVIPNLALKTTISSWCRSSGVELPQEPDYSSVERVVRSSMASQQGSPEFRVSERELLKAVADNPPVIFSHAATELGPRVNHFDSSSSEESVIIVPSPGTPLPLTTRPTCYSSSSSSSITADCDIQNPNGPVSEEEDKLVSKLRSSEIFEQEEAVISLRSITRNREDTRISLCTPRLLSALRSLIDSRYTIVQVNAVASLVNLSLEKSNKVKIVRAGFVPHLIDVLKGGSDESQEHAAGALFSLALNDNNKMAIGVLGALQPLMHALRSESERTRHDSALALYHLSLVQSNRVKLVKLGAVPTLLAMAKSGKSAGRVLLILCNLAVCTEGQSAMLDGDAVECLVGLLRGNELDSESTRENCVAALYSLSHGSMRFKALAKEARAMEVLKEIEERGTERAREKAKRIVQMMRAGGEEDEDGTGSNLESAGLNRTRFRVGNGRNINIANSTAF 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1926 532 Pfam Armadillo/beta-catenin-like repeat 290 326 IPR000225 GO:0005515
Bisa08g1926 532 Pfam Armadillo/beta-catenin-like repeat 328 367 IPR000225 GO:0005515
Bisa08g1926 532 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 298 335 IPR000225 GO:0005515
Bisa08g1926 532 SMART Ubox_2 34 97 IPR003613 GO:0004842|GO:0016567
Bisa08g1926 532 SUPERFAMILY ARM repeat 219 490 IPR016024 -
Bisa08g1926 532 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 31 104 IPR013083 -
Bisa08g1926 532 ProSiteProfiles U-box domain profile. 30 104 IPR003613 GO:0004842|GO:0016567
Bisa08g1926 532 Pfam U-box domain 32 100 IPR003613 GO:0004842|GO:0016567
Bisa08g1926 532 SMART arm_5 246 286 IPR000225 GO:0005515
Bisa08g1926 532 SMART arm_5 287 327 IPR000225 GO:0005515
Bisa08g1926 532 SMART arm_5 328 368 IPR000225 GO:0005515
Bisa08g1926 532 SMART arm_5 408 451 IPR000225 GO:0005515
Bisa08g1926 532 FunFam RING-type E3 ubiquitin transferase 12 105 - -
Bisa08g1926 532 FunFam RING-type E3 ubiquitin transferase 215 491 - -
Bisa08g1926 532 SUPERFAMILY RING/U-box 17 106 - -
Bisa08g1926 532 MobiDBLite consensus disorder prediction 1 30 - -
Bisa08g1926 532 PANTHER U BOX DOMAIN-CONTAINING 24 492 - -
Bisa08g1926 532 Gene3D - 214 492 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1926 Bisa-ChrBisa08 46381870 46383468 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1926 3 532 U-box Gene Family AT5G65200 57.321 0.0 579