Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1876 ATGGAGGGAAGGAAGATTAGGTTGGTGTTGATGTGTATGGTAGTGTACGTATGTAGAACAGTCCCTTCGGTGAGAGGGAACATAGGAGAGTTCGATGAATATTGGAAGCAGCGATCCAAGGAAGCTAGGAGGGCTGCCCACAAGGCTTACAAACCTGACCCTCTCAACGTCACTGCACATTTCAATCACCATGTTCACATTGCTGTGAAAGAATTGAATAGCACAAGAAGGGAATTAGGAGACAAACACAAGAAATACGCAGGGCCATGCGTAGCCGTTAACCCCATCGACAAATGCTGGAGATGTGACCCAAAATGGGAAGCCAACCGCAAGAGGCTCGCCGACTGCGCCATCGGCTTCGCCCATGGCACAACGGGCGGCAAGGCTGGCAGAATCTACGTCATCACCGACCCATCCGACAGTGACATGCTCAACCCTAAACCCGGAACCCTACGACACGCTGTGATCCAGCCCGAGCCGCTGTGGATCATCTTCGCACGGAGTATGAACATCAAGCTGAGCCAAGAGCTCCTCATGACAAGCGATAAGACTATAGACGGGCGTGGCGCCCACGTTCACATCAGCCATGGAGCTCAGATCTCGCTGCAGTTCGTGAGGAATATCATCATTCATGGATTGCACATCCACGACATCAAGAAGGGGAGTGGCGGGATGATCAGAGACTCTGTGAATCACTTTGGGATACGTACGCAGAGTGACGGCGACGGAATTTCGATGTACGGAGTCTCGAATGTTTGGATCGATCATATCTCACTGGCCAATTGTGAGGACGGCTTAATCGATGCAATCATGGGATCCACTGCTATTACCATCTCCAATTGCCATATGACTAGTCATAATGACGTGATGTTATTTGGTGCGAGTGACTGGTATTCAAAGGATGCAGTGATGCAAGTAACTATTGCTTTCAACCATTTCGGGCAAGGACTGGTGCAGAGAATGCCACGGTGCAGATGGGGTTACTTTCATGTGGTGAACAATGACTACACTCATTGGCTTATGTATGCCATTGGTGGTAGTACCCATCCCACCATCATTAGCCAAGGAAACCGATTTATTGCACCTCCAAACATTAACTGCAAAGAGGTGACAAAGAGGGACTATGCACCTGAGAGTGTGTGGAGGTCTTGGAATTGGAGATCAGAGGGTGATTTGTTTATGAATGGAGCCTTCTTTACGGAGTCCGGAGTCCCAGTCCCAAATAAGTTCAAGGACCAATTCTCTGCACAACCAGGGACGATGGCAAACGTTCTTACTCGCTTCTCTGGGGCCCTCGGTTGTATACCAGGCAAGCCATGTTGA 1323 0.4958 MEGRKIRLVLMCMVVYVCRTVPSVRGNIGEFDEYWKQRSKEARRAAHKAYKPDPLNVTAHFNHHVHIAVKELNSTRRELGDKHKKYAGPCVAVNPIDKCWRCDPKWEANRKRLADCAIGFAHGTTGGKAGRIYVITDPSDSDMLNPKPGTLRHAVIQPEPLWIIFARSMNIKLSQELLMTSDKTIDGRGAHVHISHGAQISLQFVRNIIIHGLHIHDIKKGSGGMIRDSVNHFGIRTQSDGDGISMYGVSNVWIDHISLANCEDGLIDAIMGSTAITISNCHMTSHNDVMLFGASDWYSKDAVMQVTIAFNHFGQGLVQRMPRCRWGYFHVVNNDYTHWLMYAIGGSTHPTIISQGNRFIAPPNINCKEVTKRDYAPESVWRSWNWRSEGDLFMNGAFFTESGVPVPNKFKDQFSAQPGTMANVLTRFSGALGCIPGKPC 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 240 261 IPR018082 -
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 116 133 IPR018082 -
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 140 165 IPR018082 -
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 384 408 IPR018082 -
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 342 361 IPR018082 -
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 176 192 IPR018082 -
Bisa08g1876 440 PRINTS Pollen allergen Amb family signature 320 339 IPR018082 -
Bisa08g1876 440 Pfam Pectate lyase 179 359 IPR002022 -
Bisa08g1876 440 Pfam Pectate lyase, N terminus 27 79 IPR007524 GO:0030570
Bisa08g1876 440 SMART amb_all 168 365 IPR002022 -
Bisa08g1876 440 PANTHER PECTATE LYASE 18-RELATED 42 438 IPR045032 GO:0030570
Bisa08g1876 440 SUPERFAMILY Pectin lyase-like 94 430 IPR011050 -
Bisa08g1876 440 Gene3D - 93 433 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1876 Bisa-ChrBisa08 45119439 45122646 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1876 9 440 Polysaccharide Lyase AT1G14420 58.222 0.0 547