LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g1827	ATGGGAAGACCGCCTTGCTGTGATAAAATTGGGATTAAGAAAGGGCCTTGGACTCCCGAAGAGGACATCATCTTGGTCTCTTACATTCAACAACACGGCCCTGGCAATTGGAGATCTGTTCCCACCAATACTGGTTTGATGAGATGCAGTAAAAGCTGCAGACTTCGATGGACTAACTACCTCCGTCCCGGCATCAAACGAGGCAACTTCTCCGATCACGAGGAGAAGATGATCATCCACCTCCAAGCTCTTCTGGGTAACAGATGGGCAGCCATAGCCTCGTATCTGCCGCAGAGGACAGACAACGACATAAAGAACTACTGGAACACGCATTTGAAGAAGAAGCTGAAGGGGGAAACAGGGACAGAGGGTAACACCGATCAGGAAGAAGGAGGATACTCATCGTCGAGCTCGCAGCCAAACAAGGGACAGTGGGAGAGGAGGCTCCAAACAGATATCCAAATGGCCAAACAAGCCCTATGCGAGGCTCTGTCCCTTGACAAGCCCATGACTACTAGTACTTTTGGTACCTGTCCTCCTCTGACCCATAACTTCCCTTTCTCAAACACCAACCCCTCCACAAATAACAACCTTTTAGGACCATCGTGCACCTCCTCGTACTCGTACGCGTCGAGCTCAGAAAACATAGCCAGGTTGCTCCAGAACTGGATGAAGAAGACCCCCAACGTTAACTCGGGTTGTGGTTCGAGTTCGAGTGAGGGAGCACAGAGTGGAAGTGGGACTACCACACCCGATCATGCCCTCGACTACAGCTCCCTCTTGACTTCCAATAGCAGTAATAATAATAAATATACCTCTGATGAGAGTAATACAAATGCTCATGGTCATAGCTTCTTCCATGGAGAAAGCAAGCCGAATTTGGAGACGCACGTGCCTCTCACGCTGCTGGAGAACTGGCTCTTCGACGACGGGGCGCCGCAAGCTCAAGCCCACGAAGACCTAATGAACATCTCACTCGACGAAAGTACACCACACCTCTTTTAG	1005	0.5025	MGRPPCCDKIGIKKGPWTPEEDIILVSYIQQHGPGNWRSVPTNTGLMRCSKSCRLRWTNYLRPGIKRGNFSDHEEKMIIHLQALLGNRWAAIASYLPQRTDNDIKNYWNTHLKKKLKGETGTEGNTDQEEGGYSSSSSQPNKGQWERRLQTDIQMAKQALCEALSLDKPMTTSTFGTCPPLTHNFPFSNTNPSTNNNLLGPSCTSSYSYASSSENIARLLQNWMKKTPNVNSGCGSSSSEGAQSGSGTTTPDHALDYSSLLTSNSSNNNKYTSDESNTNAHGHSFFHGESKPNLETHVPLTLLENWLFDDGAPQAQAHEDLMNISLDESTPHLF	334

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g1827	334	CDD	SANT	69	112	IPR001005	-
	Bisa08g1827	334	MobiDBLite	consensus disorder prediction	117	145	-	-
	Bisa08g1827	334	FunFam	MYB-related transcription factor	13	66	-	-
	Bisa08g1827	334	CDD	SANT	16	61	IPR001005	-
	Bisa08g1827	334	Gene3D	-	13	66	-	-
	Bisa08g1827	334	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	9	65	IPR017930	-
	Bisa08g1827	334	PANTHER	MYB FAMILY TRANSCRIPTION FACTOR	1	271	-	-
	Bisa08g1827	334	SMART	sant	13	63	IPR001005	-
	Bisa08g1827	334	SMART	sant	66	114	IPR001005	-
	Bisa08g1827	334	MobiDBLite	consensus disorder prediction	230	284	-	-
	Bisa08g1827	334	ProSiteProfiles	Myb-like domain profile.	62	112	IPR001005	-
	Bisa08g1827	334	Pfam	Myb-like DNA-binding domain	14	61	IPR001005	-
	Bisa08g1827	334	Pfam	Myb-like DNA-binding domain	67	112	IPR001005	-
	Bisa08g1827	334	ProSiteProfiles	Myb-like domain profile.	9	61	IPR001005	-
	Bisa08g1827	334	SUPERFAMILY	Homeodomain-like	11	108	IPR009057	-
	Bisa08g1827	334	Gene3D	-	68	141	-	-
	Bisa08g1827	334	MobiDBLite	consensus disorder prediction	125	145	-	-
	Bisa08g1827	334	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	66	116	IPR017930	-
	Bisa08g1827	334	MobiDBLite	consensus disorder prediction	230	290	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g1827	Bisa-ChrBisa08	43596079	43597345	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g1827	1	319	MYB Transcription Factor Family	AT5G62470	52.528	1.96e-108	318

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	MYB	Bisa08g1827		Myb_DNA-binding	1.6e-14	CL0123