Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1816 ATGCAGGAAAGTAGAGACCCTACAATTAAGCTCTTCGGACAGAAGATTCCGTTGCAGGGTGAAGGCGACAATCCTACCATTTCCGGCGACGACTCCGCCTCACTGGTGGCGATTGATGTCGACAAAGAAGGAGGAGGAGAAGAAGAAGAAGAAGAAGACGAAGACGGCAAAGGAGGACAAAGGAGACCAGAAGAGGAACAGGACGAAGCATACAAGGAATCTGCAGCTGGAAAAGTCACAGAGAAAGAGGCGGAACAGTCTTCAGATCCAAATCTGAACCCAAAAACACCTTCCATAGACGAAGGAACTGCAAAATCTTCGAAGCACGAAGATGGAACAAGCATGTCGCAGGAAAAACCCCTGAAGAAGCCAGACAAAGTGCTTGCGTGTCCTCGCTGCAACAGCATGGACACCAAGTTCTGTTACTACAACAACTACAACATCAATCAGCCTCGCTACTTCTGCAAATCCTGTCAGAGATACTGGACCGACGGCGGCACCATGAGGAACGTCCCAGTAGGTGCAGGACGACGAAGGAGCAAGAACACCTCCCATTATCGCCCCATCACCATCTCTGAGGCCCTCGAAGCTGCCAGGATGGATGCTCCTAATGGAACCAACGGAAAAGTTCTCAGTTTTGGGTTAGATTCGCCTATATGTGATTCCATGGCTTCTGTTCTGAATCTCGCAGAGAAAATTGCTGTTTCTAGAAGCACCCCAAATGGGTTTGAGAATCAGAAAAACACATCTTCCAGGGAAGAAAGTGGGAAAAATCAAACACTTCAAATCCCGTGTCTTCCTTGTGTCCCTTGGTCTTACCCTCCAGCTTTTCCTCCTCTGTCCTTCTATCATCACCCTGCAGCTTTCTGGAACGTTCCTTGGTTTTCAATAAACTCATGTTCTCCGACGACCTTGGAGTCCCCGAGATCTGGTTCGAATTCTCCCAAGTTGGGGAAGCACTCGAGGGAGGGGGACATGGAGAAACAGAGGAAGGGCTCTGTTTTGGTACCGAAGACTCTAAGAATCGATGACCCGAGTGAGGCTGCGAAGAGTTCGATATGGACAACGTTAGGAATCAAGAACGAGTCAGTGAGTAAGGGAGGGATGTTCGAGGCGTTTCAGTCGAAGAAGAAGGGGGAGAAGGAGAAGCATCAGAGACGTGGTGGGGTTGAAACATCGTCTTCGGTGTTGAGGGCTAACCCTGCAGCCTTGTCTAGATCTCTTAACTTCTGCGAAAACACATGA 1245 0.4916 MQESRDPTIKLFGQKIPLQGEGDNPTISGDDSASLVAIDVDKEGGGEEEEEEDEDGKGGQRRPEEEQDEAYKESAAGKVTEKEAEQSSDPNLNPKTPSIDEGTAKSSKHEDGTSMSQEKPLKKPDKVLACPRCNSMDTKFCYYNNYNINQPRYFCKSCQRYWTDGGTMRNVPVGAGRRRSKNTSHYRPITISEALEAARMDAPNGTNGKVLSFGLDSPICDSMASVLNLAEKIAVSRSTPNGFENQKNTSSREESGKNQTLQIPCLPCVPWSYPPAFPPLSFYHHPAAFWNVPWFSINSCSPTTLESPRSGSNSPKLGKHSREGDMEKQRKGSVLVPKTLRIDDPSEAAKSSIWTTLGIKNESVSKGGMFEAFQSKKKGEKEKHQRRGGVETSSSVLRANPAALSRSLNFCENT 414
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1816 414 ProSiteProfiles Zinc finger Dof-type profile. 128 182 IPR003851 GO:0003677|GO:0006355
Bisa08g1816 414 MobiDBLite consensus disorder prediction 374 414 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 55 85 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 1 123 - -
Bisa08g1816 414 ProSitePatterns Zinc finger Dof-type signature. 130 166 IPR003851 GO:0003677|GO:0006355
Bisa08g1816 414 MobiDBLite consensus disorder prediction 102 123 - -
Bisa08g1816 414 Pfam Dof domain, zinc finger 125 182 IPR003851 GO:0003677|GO:0006355
Bisa08g1816 414 MobiDBLite consensus disorder prediction 239 259 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 374 389 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 390 414 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 316 334 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 303 340 - -
Bisa08g1816 414 MobiDBLite consensus disorder prediction 86 101 - -
Bisa08g1816 414 PANTHER CYCLIC DOF FACTOR 2 1 413 IPR045174 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1816 Bisa-ChrBisa08 43272015 43274086 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1816 1 412 C2C2-Dof Transcription Factor Family AT3G47500 41.387 9.61e-92 282
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Bisa08g1816 zf-Dof 6.8e-32 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa11g2466 11 49343678 49346468 Bisa08g1816 08 43272015 43274086 CCT
Bisa08g1816 08 43272015 43274086 Bisa02g1434 02 24697460 24700123 ECH
Bisa08g1816 08 43272015 43274086 Bisa08g1816 08 43272015 43274086 ECH