Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1791 ATGGCGGAGGAGGAATCGGCTTCGCCTTCTTCCTTTGTGTTGAGCATGGAGGGTCTTGAAGATGTGGAGGACTACGTATTGGGAAATGAGCCAGAGGGTTTGACAAGGGACACATTCCATCATGTCTTTCAACTTGTGCAGAATGGCAACGTAGCATTTCGGGATAACCGTATGGAAGAGGCAATCAGCTTTTACTCAAGAGCAAACTGCATCAAGCCTGGTGATCCGGTTGTACTGAACAATCGATGTGCAGCTTATATCAGGATTAGCCAATTTCTAAAGCACAGATCTCCATTAGCTTCAGAATACAGCCCATTGAGTGGGCTTGATCCTACAACACATGCTGAACTTGGCTTGAAGGATGCTGAGAAGCTTGTCAACATCCGAAGTAATTCAGTAAAATCACACCTTTTAAAGGAAAATGCTCTTTTTCTGTTGGAGAGATATGAAATGGCCCGGGATGTTATTCTTTCAGGCCTTCAATTTGATCCGTATAGTAATTTTCTCCGGGATTCTCTTTCAAATTTGCAAAGAGCATCAGCTAGTTTGGCAAGGATGACTACTCATGGACGGCCAGAGCGCAATGATGATTTTGATTGCACTCTTTGCCTTAAGTTACTTTATGAACCTGTTACAACCCCTTGTGGACATTCTTTTTGCCGCTCATGCTTATTTCAGTCAATGGATTGTGGCAACAGATGCCCATTGTGCAGGACAGTTCTGTTTATTAGTCCTAGAACATGTTCTGTCAGTGTGACATTGAAAAACATTATACAAAAGAACTTTCCAGAGGAATATGCAGAAAGGATGCAAGAGAATGACAATTTGACCAACTTTGGCTTAGATTTAATTCCTCTTTTTGTCATGGATGTTGTCATCCCGTGTCAAAAGTTTCCACTCCATATATTTGAACCTCGTTATAGATTGATGGTCAGAAGAATAATGGAAGGAAATCATAGGATGGGAATGGTTATAATTGATTCTGCAACAGATTCCCTAGCTGAGTTTGCCTGTGAAGTGGAAATCATTGAGTGTGAGCCACTTCCAGATGGGCGATTCTATATAGAGATTGAAAGTCGCCGGAGGTTCCGTATCATCCGATCTTGGGATCAAGATGGCTATCGCATTGCAGAGGTTGAATGGATTCAGGATATTATGCCATCAGAAGGTACAACAGAGAGAGACGATTTGCAGGAAATTACATATAATGCAGCAGAGAGTGCTAGATCATGGATAAGAAGAGCTAAACAAGCAGCAGGACTAGATCCAAGAAGACTTGAGAGACTCATAAATGTTGAAGTTATGATGCCCTCGCTGCAAGATCCTGAGCGCTTTAGTTTTTGGCTTGCTACCTTATCCAATCGGAGGCCTTCTGAAAAATTGGATCTCCTACGCATAAGAGATACTAAAGAGAGGATTAGACGTGGTTTGATATTTCTACGAGAAGAGGAACAAGGCTGTAGAATCCAAGTGAAAAAGTTGAGATGGGGGAGAATCACAAACCCAGGACATCCACTGTCAGAGACGGAGAGTAAGGAAGCTGAGATGGGGGACGAACATGGGACACCCTTAGAGAGTGAAGAAGCTAAGATAGGGGATGAACAGGGGACACACACAGATAGTGAAGAAGCTGAGATAAGGGATGAATCACGAACACGGGACACCTACTGTTGGAGACAAAGAGTGAAGAGGCCTTGTCGAGACCTTTCCCTTTCTGGTCATCGTCTGCGATAA 1734 0.4314 MAEEESASPSSFVLSMEGLEDVEDYVLGNEPEGLTRDTFHHVFQLVQNGNVAFRDNRMEEAISFYSRANCIKPGDPVVLNNRCAAYIRISQFLKHRSPLASEYSPLSGLDPTTHAELGLKDAEKLVNIRSNSVKSHLLKENALFLLERYEMARDVILSGLQFDPYSNFLRDSLSNLQRASASLARMTTHGRPERNDDFDCTLCLKLLYEPVTTPCGHSFCRSCLFQSMDCGNRCPLCRTVLFISPRTCSVSVTLKNIIQKNFPEEYAERMQENDNLTNFGLDLIPLFVMDVVIPCQKFPLHIFEPRYRLMVRRIMEGNHRMGMVIIDSATDSLAEFACEVEIIECEPLPDGRFYIEIESRRRFRIIRSWDQDGYRIAEVEWIQDIMPSEGTTERDDLQEITYNAAESARSWIRRAKQAAGLDPRRLERLINVEVMMPSLQDPERFSFWLATLSNRRPSEKLDLLRIRDTKERIRRGLIFLREEEQGCRIQVKKLRWGRITNPGHPLSETESKEAEMGDEHGTPLESEEAKIGDEQGTHTDSEEAEIRDESRTRDTYCWRQRVKRPCRDLSLSGHRLR 577
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1791 577 SUPERFAMILY TPR-like 42 178 IPR011990 GO:0005515
Bisa08g1791 577 CDD RING-HC_LONFs_rpt2 197 241 - -
Bisa08g1791 577 MobiDBLite consensus disorder prediction 500 553 - -
Bisa08g1791 577 Pfam Zinc finger, C3HC4 type (RING finger) 200 237 - -
Bisa08g1791 577 Gene3D Tetratricopeptide repeat domain 40 179 IPR011990 GO:0005515
Bisa08g1791 577 Gene3D - 282 384 IPR046336 -
Bisa08g1791 577 SUPERFAMILY PUA domain-like 284 480 IPR015947 -
Bisa08g1791 577 PANTHER RING FINGER PROTEIN 127 29 483 - -
Bisa08g1791 577 ProSitePatterns Zinc finger RING-type signature. 215 224 IPR017907 -
Bisa08g1791 577 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 186 279 IPR013083 -
Bisa08g1791 577 ProSiteProfiles Zinc finger RING-type profile. 200 238 IPR001841 -
Bisa08g1791 577 SMART lon_5 283 482 IPR003111 -
Bisa08g1791 577 SUPERFAMILY RING/U-box 195 263 - -
Bisa08g1791 577 SMART ring_2 200 237 IPR001841 -
Bisa08g1791 577 ProSiteProfiles Lon N-terminal domain profile. 281 482 IPR003111 -
Bisa08g1791 577 Pfam ATP-dependent protease La (LON) substrate-binding domain 284 481 IPR003111 -
Bisa08g1791 577 MobiDBLite consensus disorder prediction 508 553 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1791 Bisa-ChrBisa08 42821304 42841595 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1791 198 245 C3H Transcription Factor Family AT2G42030 41.509 8.30e-08 52.8