Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1767 ATGGAAGAAGATCAAGATCAAGAATCCAAACATGTGTGTAAGTTCTGCAGCAAGAACTTCCCCTGTGGGAGATCCCTGGGGGGTCACATGAGGTCCCACATCGCTGAAACGGAGGGCAAATTCTCCGGTGTCGTCAAGCAGAACGGCGAAGCTGCGTATGATCTGAGAGAGAATCGCAAGAAGACTTGGAGAGTCGCCGATTCAATTGACGACACTGTCGTTTTGAAGAGCGACAAGATGTGCAAAGAGTGTGGGAAAGGGTTTCTCTCTTGGAAGGCTCTGTTTGGCCACATGAAATGCCACTCCGATAAAGAAAGAGCTTCTGTTAATAATAGCGATCAAGATTCATGGCCGACCTCCCTCATCGACACCCAATCGGACAACGAAGATCCAAATCGAAGAAGAAGAAAAACGACAAGATCAAACAGAACGACAACTTCAACAACAACATCCTCTTCTCTGACATTCCAGCAGGAGCAAGAAGAGGTTGCAGTGAGCTTGATGATGCTCAGCAGAGACATAACCCCATGGGGATTCCAAGATATGGGGTCTCAGAAAAAACCAAAAAGATCCGAACTTTCTGCCTCTGATCAAATTCCAAGAAATGGGTTCACGAAGAACGAGGGTAAGAAGCTCGATTCTCAGTCTCCAAAGGAGTACGACGACGACTCGGAGGAAGAAGATGAAGAACGAGGGAAGAAGAATTACAAGTTAAACTCTCATAAAAAAGTAAAATTCCAGTGTACAACTTGCAACAAGATCTTCCACTCCTACCAAGCTCTTGGAGGCCACAGAGCTAGTCACAAGAAGTTCACCAGAACCTGCTTAGCTAATTCAACTTCAAGGGACGAAGAGAGCAGCGAAAACAGCATTGAAACTGATATGGTACAACATGAACAACAAGGTTCTGGCTTTGATCATGATCATGGTCATCAAGAGGCAGAGTCAAAGAAGAGAAAAGGGCATAAGTGTCCGATTTGCCTCAAGATTTTTGCGTCTGGGCAAGCATTGGGTGGGCATAAGAGGTCCCATTTAAGTGGTGGGTCTGAAAATACGAAGAATCAGAATCAAAGAGTTGGAGAAATTAGGGATTTCATTGATCTTAATCTTCCTCCTGACGCTGCTTCCACAGAGGAAGAGAGCAATAATGGTGGTAATGGTAATAATAATAGCCATTCTGATCAGTCTTACAGATCCCCCTGGTGGGTGAGAGGAAGGCACAAACAGGAGGCGCTGCTGAGCTTAATGTCTAACTGA 1257 0.4527 MEEDQDQESKHVCKFCSKNFPCGRSLGGHMRSHIAETEGKFSGVVKQNGEAAYDLRENRKKTWRVADSIDDTVVLKSDKMCKECGKGFLSWKALFGHMKCHSDKERASVNNSDQDSWPTSLIDTQSDNEDPNRRRRKTTRSNRTTTSTTTSSSLTFQQEQEEVAVSLMMLSRDITPWGFQDMGSQKKPKRSELSASDQIPRNGFTKNEGKKLDSQSPKEYDDDSEEEDEERGKKNYKLNSHKKVKFQCTTCNKIFHSYQALGGHRASHKKFTRTCLANSTSRDEESSENSIETDMVQHEQQGSGFDHDHGHQEAESKKRKGHKCPICLKIFASGQALGGHKRSHLSGGSENTKNQNQRVGEIRDFIDLNLPPDAASTEEESNNGGNGNNNSHSDQSYRSPWWVRGRHKQEALLSLMSN 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1767 418 MobiDBLite consensus disorder prediction 111 126 - -
Bisa08g1767 418 SUPERFAMILY beta-beta-alpha zinc fingers 8 37 IPR036236 -
Bisa08g1767 418 ProSitePatterns Zinc finger C2H2 type domain signature. 13 33 IPR013087 -
Bisa08g1767 418 ProSitePatterns Zinc finger C2H2 type domain signature. 81 101 IPR013087 -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 142 158 - -
Bisa08g1767 418 Gene3D Classic Zinc Finger 1 106 - -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 300 319 - -
Bisa08g1767 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 246 268 IPR013087 -
Bisa08g1767 418 SUPERFAMILY beta-beta-alpha zinc fingers 80 268 IPR036236 -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 375 398 - -
Bisa08g1767 418 Pfam C2H2-type zinc finger 322 345 - -
Bisa08g1767 418 Pfam C2H2-type zinc finger 11 33 - -
Bisa08g1767 418 Pfam C2H2-type zinc finger 81 103 - -
Bisa08g1767 418 Pfam C2H2-type zinc finger 246 270 - -
Bisa08g1767 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 11 38 IPR013087 -
Bisa08g1767 418 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 401 - -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 204 218 - -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 177 236 - -
Bisa08g1767 418 ProSitePatterns Zinc finger C2H2 type domain signature. 248 268 IPR013087 -
Bisa08g1767 418 Gene3D Classic Zinc Finger 243 344 - -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 372 402 - -
Bisa08g1767 418 SMART c2h2final6 322 344 IPR013087 -
Bisa08g1767 418 SMART c2h2final6 11 33 IPR013087 -
Bisa08g1767 418 SMART c2h2final6 79 101 IPR013087 -
Bisa08g1767 418 SMART c2h2final6 246 268 IPR013087 -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 106 158 - -
Bisa08g1767 418 MobiDBLite consensus disorder prediction 301 319 - -
Bisa08g1767 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 322 344 IPR013087 -
Bisa08g1767 418 ProSitePatterns Zinc finger C2H2 type domain signature. 324 344 IPR013087 -
Bisa08g1767 418 ProSiteProfiles Zinc finger C2H2 type domain profile. 79 106 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1767 Bisa-ChrBisa08 42160888 42162144 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1767 4 173 C2H2 Transcription Factor Family AT1G26610 37.864 2.22e-30 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Bisa08g1767 zf-C2H2_6 6.8e-10 CL0361