Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1739 ATGGCCGCCGCTGCTCGTCCCCTCGTTACCGTTCAAGCCCTCGAAGGCGATATGGCCACTGACGCAGCCCCAACCATTCCTCTCCCCGATGTCATGAAGGCTTCGATCCGACCTGACATTGTCAACTTCGTTCACTCCAACATTTCCAAGAACAGTCGCCAACCCTACGCCGTCAGCAGGCGTGCCGGCCACCAGACCTCCGCCGAATCATGGGGCACTGGTCGTGCCGTTTCTCGTATCCCACGTGTTCCCGGTGGCGGTACCCACCGTGCCGGACAGGCTGCATTCGGCAACATGTGCCGTGGTGGCCGTATGTTCGCTCCTACCAGGATCTGGCGCCGCTGGCACCGGAGGGTCAATGTGACTCAGAAACGGCACGCTGTTGTTTCAGCCATTGCTGCATCGGCGGTTACGTCTCTGGTTATGGCTCGCGGTCACAGGATTGAGTCCGTGCCGGAAATGCCTTTGGTGGTAAGTGATTCTGCCGAGGGCGTTGAGAAGACGAAGGATGCGATCAAAGTTTTGAAGCAGGTCGGTGCGTTTGACGATGCTGAAAAGGCAAAGGACAGTCACGGGATCCGGCCAGGTAAAGGTAAGATGAGAAATCGTCGCTATATTTCTCGCAAAGGTCCTCTGATTGTGTATGGAACCGAAGGAGCTAAAGCAGTTAAGGCCTTCAGGAACCTTCCTGGAGTTGAGGTTGCGAATGTGGAGAGACTGAATCTGCTTAAGCTAGCACCTGGTGGTCATCTTGGGAGGTTCGTTATTTGGACCAAGTCAGCGTTTGAGAAGCTCGATTCTATATATGGGTCATTTGACAAACCATCGAATAAGAAGAAGGGTTACTTGCTTCCGAGAGCGAAGATGGTCAATTCTGATTTGGCTAGGATTATTAACTCCGACGAGATTCAGTCGGTTGTGCGGCCAACCACAAAGGATGTCCAGAGGGCACCGCTGAAGAAGAACCCACTCAAGAACCTGAATGCTATGTTGAAGCTGAATCCGTATGCCAAGACAGCCAAGAGAATGGCTCTGCTAGCTGAGGCTCAGCGTGTGAAAGCGAAGAAAGAGAAGCTGGATAAGAAGAGGAAGTCCGTTTCCAAGGAGGAGGTTTCTGCTAAAAAGGCTGCAAGCAAGGCAGGAAAGGCGTGGTACTATACCATGGTCTCTGACAGCGATTATTCAGAATTTGAGAACTTCTCAAAGTGGTTGGGTGTTTCGCAGTGA 1227 0.5257 MAAAARPLVTVQALEGDMATDAAPTIPLPDVMKASIRPDIVNFVHSNISKNSRQPYAVSRRAGHQTSAESWGTGRAVSRIPRVPGGGTHRAGQAAFGNMCRGGRMFAPTRIWRRWHRRVNVTQKRHAVVSAIAASAVTSLVMARGHRIESVPEMPLVVSDSAEGVEKTKDAIKVLKQVGAFDDAEKAKDSHGIRPGKGKMRNRRYISRKGPLIVYGTEGAKAVKAFRNLPGVEVANVERLNLLKLAPGGHLGRFVIWTKSAFEKLDSIYGSFDKPSNKKKGYLLPRAKMVNSDLARIINSDEIQSVVRPTTKDVQRAPLKKNPLKNLNAMLKLNPYAKTAKRMALLAEAQRVKAKKEKLDKKRKSVSKEEVSAKKAASKAGKAWYYTMVSDSDYSEFENFSKWLGVSQ 408
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1739 408 ProSitePatterns Ribosomal protein L1e signature. 120 146 IPR013000 -
Bisa08g1739 408 Coils Coil 342 369 - -
Bisa08g1739 408 SUPERFAMILY Ribosomal protein L4 20 267 IPR023574 GO:0003735|GO:0005840|GO:0006412
Bisa08g1739 408 PANTHER 60S RIBOSOMAL PROTEIN L4 4 401 IPR045240 -
Bisa08g1739 408 Pfam Ribosomal protein L4/L1 family 26 266 IPR002136 GO:0003735|GO:0005840|GO:0006412
Bisa08g1739 408 MobiDBLite consensus disorder prediction 54 92 - -
Bisa08g1739 408 MobiDBLite consensus disorder prediction 356 380 - -
Bisa08g1739 408 Pfam 60S ribosomal protein L4 C-terminal domain 280 352 IPR025755 -
Bisa08g1739 408 Gene3D - 3 308 IPR023574 GO:0003735|GO:0005840|GO:0006412
Bisa08g1739 408 MobiDBLite consensus disorder prediction 362 376 - -
Bisa08g1739 408 MobiDBLite consensus disorder prediction 54 73 - -
Bisa08g1739 408 FunFam 60S ribosomal protein L4 3 308 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1739 Bisa-ChrBisa08 41142450 41145166 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1739 2 408 Cytoplasmic Ribosomal Protein Gene Family AT3G09630 82.555 0.0 682