Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1719 ATGGAGTCTTGGAGTTATGTTTCCGGAGATAAGGGTTTTTTGTCCAACAATACACTTCCATCCTCTGATACGCTTGCGAGAAGTAAGAGTTCTTTTCTAGGTTGCGAACTGAAAACTCAATCTAGGCCTTCCAACGACATTTTAGCCTCGGCTCAGCATAATATAGAGAATCAAGGTTGTGAGGAATTGGGTTTTCCAGAAATGTTGGGGAAACAATTGTCCAGTGATCCGATTGGCTGTGTTATGAGTGCTCCAAATGCATTTTCCGGAGGCGAAGACTGCAATTCAAAGTTTTCACACTCTATGGTTGAATCTAACAGCCGAGATTCCTTTATTGATTTGAAACTGGGACGATTTGGCGATCCTAGAGATGCCAATGATTCAACATTTTCTAAAGGTAACACCGTTTTGTGTTCTTCAGAGTCATCTACAACTCCCAAGAGAGTAAGAACTTCAGGGGTGCAGTCACTGACTGCTCACTGCCAAGTCTATGGCTGCAACAAGGATCTAAGCGCCTCTAAAGACTACCACAAGAGGCACAAAGTTTGTGAAGTTCATTCCAAGACATCTAAAGTTATAGTGAATGGCATAGAGCAGAGGTTTTGTCAGCAATGTAGTAGGTTTCATTTGTTGGCTGAATTTGATGATGGTAAGCGTAGTTGTCGCAAACGCCTTGCAGGACATAATGAGCGTCGTAGAAAGCCACAAATGGGTTTTCACTCTGGAAAGGCCAGGAGGATGTTTCAGTCATATAATGATGGCAGATCCCAGGGTACCATGCTAACAACGGCATCTTTTATCTGCCAAGAGATACTCCCTAATGGTGTTTTGAATTCTGAAAAATTTGGGGCCAATAACTGGTGGAGACCTGTAAAGGTCGAAGATGGGACTGATTTTAGGCATATATCTACTAATCCTATTACAAATGGCCATTCTCAATCAAGGTCTCTGTTTCCTTCATATGCTGAAAAGCAATTTCCCTTTCTAAATGAAAGCGGTGCTGCATCCAACATGGGAGGCATATTCTGTGAGAACAATAGTCAATATCTACCTGCTCTTGGGGACCCTCATTCTGGGCCCCGACCATTATTCCAAGACACCTTCTTAGGAAGTGAGGACTTCAATGTTTTTGATACAGCATCAACTGTTCAGGGAATACCGGGACTCACGGACTCAGGTTGTGCTCTCTCTCTTCTGTCATCTCAGTCCCAGAACTCTTCAAGCCATTCATCAGGAATTTCCATGGCTTCCCCCATGGTTATTCCAAGCAGTCACAGCCATTACAGCTTGAGTCAGGTCTCTGAAAAGATCGTAGGAATAAGCTCACAGGCTTCTACAGGTGGAGTGTCAGGTAGCTTTCCATCAGAAATAAATCCTCCTGATGGAGGTCATCTTGGTTCTGCATTGATATCTGACAGTAATGATATTGTCAACTTAGAAATAGTAGATGGTTTCTTCCAAGGGACAGATTTTGTGACTATGAAAAATCGTCTTTCCTGTGAAGATGCCCCCACTATTGACTTGCTTCAACTGTCATCACAGCTCCACCGAGTCGAGAATCAAAGGCAATCCTTGCAGGTGAAGCAAGAAAATGATTCTTTTTGCTCCCTTCGGATTACTTAA 1623 0.4307 MESWSYVSGDKGFLSNNTLPSSDTLARSKSSFLGCELKTQSRPSNDILASAQHNIENQGCEELGFPEMLGKQLSSDPIGCVMSAPNAFSGGEDCNSKFSHSMVESNSRDSFIDLKLGRFGDPRDANDSTFSKGNTVLCSSESSTTPKRVRTSGVQSLTAHCQVYGCNKDLSASKDYHKRHKVCEVHSKTSKVIVNGIEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRKPQMGFHSGKARRMFQSYNDGRSQGTMLTTASFICQEILPNGVLNSEKFGANNWWRPVKVEDGTDFRHISTNPITNGHSQSRSLFPSYAEKQFPFLNESGAASNMGGIFCENNSQYLPALGDPHSGPRPLFQDTFLGSEDFNVFDTASTVQGIPGLTDSGCALSLLSSQSQNSSSHSSGISMASPMVIPSSHSHYSLSQVSEKIVGISSQASTGGVSGSFPSEINPPDGGHLGSALISDSNDIVNLEIVDGFFQGTDFVTMKNRLSCEDAPTIDLLQLSSQLHRVENQRQSLQVKQENDSFCSLRIT 540
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1719 540 ProSiteProfiles Zinc finger SBP-type profile. 158 235 IPR004333 GO:0003677
Bisa08g1719 540 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 82 475 IPR044817 GO:0003677
Bisa08g1719 540 FunFam Squamosa promoter-binding-like protein 14 152 222 - -
Bisa08g1719 540 SUPERFAMILY SBT domain 159 239 IPR036893 GO:0003677|GO:0005634
Bisa08g1719 540 Coils Coil 508 528 - -
Bisa08g1719 540 Gene3D - 152 222 IPR036893 GO:0003677|GO:0005634
Bisa08g1719 540 Pfam SBP domain 161 234 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1719 Bisa-ChrBisa08 40344029 40347590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1719 1 277 SBP-box Gene Family AT1G69170 41.935 3.17e-51 179
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Bisa08g1719 SBP 1.5e-31 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1719 08 40344029 40347590 Bisa08g1719 08 40344029 40347590 ECH