Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1716 ATGGGAAGGGGAAGAGTGGAGCTGAAGAGGATAGAGAACAAGATCAATAGGCAGGTGACGTTCAGCAAGAGGAGGTCGGGCTTGCTTAAGAAGGCTCGGGAGATCTCTGTGCTCTGTGATGCTGAGGTGGCTCTCATCGTCTTCTCCCCCAAAGGCAAGCTCTTCCACTACTCCAGCGACTCCTGCATGGAAAGAATTCTGGAACGGTATGAGAGGTATTCATATGCAGAGAGGCAGCGAGGAACAAATGATCATCAACCCAACGATCTCCAAGACTGGGGGCTCCAGCACGCCAAGCTCAAGGCTAGGATAGAGGTCCTCCAAAGAAATCAAAGGCATTTTATGGGAGAAGATCTTGATGGCTTAAGTCTCAAAGAACTCCAGAATTTGGAGCATCAGCTTGAATCTTCTCTTAAACATATCAGATCACGAAAGAACCAACTCATGCATGAATGTGTTTCAGAGCTTCAGAAAAAGGATAAGGCACTGCAGGAACAAAACAAATTGCTGGCCAAGAAGATAAAGGAGAAAGAGAAAGAATTGGCCCAACAGCAAGAAGCACAGCCACAATTGGAGCGACAAAGCTGTGATTCCTCCTCCTCTCTCCATTTACCTCCACAGCCATTGCAGCCCTTCAATATTATTGGAGGGTCGGCAGGAGCAATGAGAGGGCTTGAAGTGAAGCATCAAGGAAAGCAAAGGCTTAAGGTGACATTTGATGATGGTAAACCCAAGTATAACCGTAGGTTGGGGGTTTCGCCAGCCAAATCCATGGTAGCGCTTGTGGTAGAGGCTGGTTTGAGAAGGGGAGAAGGAGAAGTTGAAGTGCATGTTTGA 837 0.4755 MGRGRVELKRIENKINRQVTFSKRRSGLLKKAREISVLCDAEVALIVFSPKGKLFHYSSDSCMERILERYERYSYAERQRGTNDHQPNDLQDWGLQHAKLKARIEVLQRNQRHFMGEDLDGLSLKELQNLEHQLESSLKHIRSRKNQLMHECVSELQKKDKALQEQNKLLAKKIKEKEKELAQQQEAQPQLERQSCDSSSSLHLPPQPLQPFNIIGGSAGAMRGLEVKHQGKQRLKVTFDDGKPKYNRRLGVSPAKSMVALVVEAGLRRGEGEVEVHV 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1716 278 Gene3D - 13 91 IPR036879 GO:0003677|GO:0046983
Bisa08g1716 278 Pfam K-box region 88 174 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa08g1716 278 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 CDD MADS_MEF2_like 2 79 IPR033896 GO:0000977|GO:0045944
Bisa08g1716 278 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 188 - -
Bisa08g1716 278 MobiDBLite consensus disorder prediction 184 207 - -
Bisa08g1716 278 ProSiteProfiles K-box domain profile. 90 180 IPR002487 GO:0003700|GO:0005634|GO:0006355
Bisa08g1716 278 Coils Coil 124 147 - -
Bisa08g1716 278 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 Coils Coil 153 194 - -
Bisa08g1716 278 MobiDBLite consensus disorder prediction 180 211 - -
Bisa08g1716 278 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 Coils Coil 90 110 - -
Bisa08g1716 278 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Bisa08g1716 278 FunFam MADS-box transcription factor MADS-MC 13 86 - -
Bisa08g1716 278 SUPERFAMILY SRF-like 2 86 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1716 Bisa-ChrBisa08 40211762 40224557 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1716 1 212 MADS-box Gene Family AT1G26310 64.623 2.54e-91 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Bisa08g1716 K-box 1.3e-28 No_clan