Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1652 ATGTCAGCCATGGTTTCAGCTCTTGCTCAAGTCATTGGTGCTTCCCCTAATGCCTATCAACACCCTCCTTCATCTGATCAATCCCAGTATTGTAGCTCTCAGCTAAATAATGAACAATCCCAACCTTCCCAAAATCAAGGGAACATAAGGAGAAGAAACTACAGGGGAGTGAGGCAGAGGCCATGGGGGAAATGGGCTGCTGAGATTCGAGATCCGAAGAAAGCTGCGAGGGTTTGGCTTGGGACATTCGATACTGCCGAGGCTGCCGCTCTTGCGTACGATGAAGCTGCTCTCAGGTTCAAAGGAAGCAAAGCCAAGCTCAATTTTCCAGAACGTGTTCAACTTCAGCTTCACCCTGCGAGTACGACGTCGTCTGCACCTGATCCTGCTTACCTCACCAATCGTGGTACTGGCACTCCTCAACAGCAATCACTTCCTCATCCTCCAACCCAAACGTTCTCGGACCAAGCTGCTTCTTCGGTTAATCCTTACTACCAGTATCACCAACACCTTCTGAACAGCAGTTATAACTATGGTGTGCCTGGTTTTAATTATGGGAGAGACGTGTTTTTTTCTGGTGTGTCTTCTTCGTCTTCATCGTCTGGATCTGGAATGTCCCAACAACAACAACAAGATCAGTTTCTAAGGTTTTCGATGCAATTCGGAGGTTCTTCTTCTTCGTCTTCTACTTCTCATCCTCCTACAGATTGGACACATCATCATGACCATGATGGTAAAAGTTGA 744 0.4704 MSAMVSALAQVIGASPNAYQHPPSSDQSQYCSSQLNNEQSQPSQNQGNIRRRNYRGVRQRPWGKWAAEIRDPKKAARVWLGTFDTAEAAALAYDEAALRFKGSKAKLNFPERVQLQLHPASTTSSAPDPAYLTNRGTGTPQQQSLPHPPTQTFSDQAASSVNPYYQYHQHLLNSSYNYGVPGFNYGRDVFFSGVSSSSSSSGSGMSQQQQQDQFLRFSMQFGGSSSSSSTSHPPTDWTHHHDHDGKS 247
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1652 247 PRINTS Ethylene responsive element binding protein signature 76 92 IPR001471 GO:0003700|GO:0006355
Bisa08g1652 247 PRINTS Ethylene responsive element binding protein signature 54 65 IPR001471 GO:0003700|GO:0006355
Bisa08g1652 247 Gene3D AP2/ERF domain 52 112 IPR036955 GO:0003700|GO:0006355
Bisa08g1652 247 MobiDBLite consensus disorder prediction 16 56 - -
Bisa08g1652 247 CDD AP2 53 111 IPR001471 GO:0003700|GO:0006355
Bisa08g1652 247 MobiDBLite consensus disorder prediction 196 234 - -
Bisa08g1652 247 FunFam Ethylene-responsive transcription factor 2 52 111 - -
Bisa08g1652 247 Pfam AP2 domain 53 102 IPR001471 GO:0003700|GO:0006355
Bisa08g1652 247 SUPERFAMILY DNA-binding domain 53 111 IPR016177 GO:0003677
Bisa08g1652 247 PANTHER DNA-BINDING DOMAIN 28 206 IPR044808 GO:0003700|GO:0009873
Bisa08g1652 247 SMART rav1_2 53 116 IPR001471 GO:0003700|GO:0006355
Bisa08g1652 247 MobiDBLite consensus disorder prediction 196 247 - -
Bisa08g1652 247 MobiDBLite consensus disorder prediction 17 52 - -
Bisa08g1652 247 ProSiteProfiles AP2/ERF domain profile. 53 110 IPR001471 GO:0003700|GO:0006355
Bisa08g1652 247 MobiDBLite consensus disorder prediction 118 156 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1652 Bisa-ChrBisa08 38610390 38612104 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1652 1 115 AP2-EREBP Transcription Factor Family AT5G61890 69.748 1.40e-48 159
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Bisa08g1652 AP2 6.5e-15 CL0081
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1652 08 38610390 38612104 Bisa08g1652 08 38610390 38612104 ECH