Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1648 ATGCCTCCTCTTCTTCGTCATTCTCTTCCTCATGTCGTGAAGTTGCCATTCCCTTTAATAGGCCATGAGGTGGTTGATGTTGATGAAGAGGAGGTCAAAACAGTTGTTGAATCAGGTGAAGGAGTTGTGGATGAAACCAAAGACGGTGAAGATTTGAATGCTGTGATACAGAGTAAGGTGAGTGGTGTGCTTGTTGAGTCAGAGACAGTGGAGGAGGAAACAAAAGAGGCTTTTGTTGTACGAGTTCATGAGATTGGATATGGCGTATGCTATTCATATTGTGCTAGCCATAGGCAGTTAGCGAAGGAGAAAAACAAATTTGTTGTTGGTAGCGATGGTGAGCAGGACAATGGCACCGGGAGGAGAGAGAGCGGTATGGATCAAGTCCCTTGGCGACGACGACGACCCAATGGATGTGGGTTTGGATTTGGGGGCGTAATGATGCCTTCTGAAATAATGGATCACAGGGGCGCGTCTGCCTCATCACACTTTTTTGATGATGTTTCGTTTTGCTCTGAGTTCTTTCACTCTGTTTTAAACTGCATACGGCTGCTTCTTGCATTTGGAATAGCAATTATTGGTGCAGCAAGTACACTTAATCCTAGTGTCTTGAATTCTCAAACTAATGTATTTGTTTCAGTTGAGGCAAAGGCTTTCTTGATGCATTTTTACTATATTTTTCTTAGTTTTGGTATGACTGGGGTCAATTGTGGAGGAAAAAATGGAATGGTAGCATCACCAGGTGGCATCTTGAATGCTTTTTCACCTCGAGAAATTAGTGCAAAGACAGGCTGGCCAATGTCAAATATGGGTCTGTCTGGAGAAATTGGTGGAGAAGAAGGCTTTGTTGATATATATACGGCCTTCAAGGAATCATTAAATCATCATCCCAGATCACAGTCTGATGTTTCTATGCAGCCAGCATATAACCATTATGGTTTAACTGGGAATAAGATTGTGACTAATACTGCCTCTACTGAAAGTACACTATTCTCAAGCTCACTGTCTGAGATATTTCCCCAAAAGTTGAGGTTGACGGCAAATGATGTTTTGCCTCATCTGCCTGTTACTGTTGGTTCCCTTCCTGAGGAGGAACCATATAAATCTATTAAAGAAATTGAGGCTGACACTATTGGAAATCTACTTCCTGATGAAGACGATCTGTTTTCCGGTGTCACTGATGACTTGGGATACAATACTCATACCAGAACAGGTGATGACTTGGAAGATTTTGATTTGTTTAGTAGTGGTGGAGGCATGGAGCTGGAAGGAGATGAACATCTAAGCTCAGGAAAAAGGATAAGTGGTCTGGATGGAGATTCTGGATACTTAGGAGGTTTTAAAGAAAAACTTCCTTTTGTTGGACACCCTTCTAGGACACTCTTTGTCAGAAACATCAATAGCAATGTTGAAGATTCTGAGCTAAAGGCTCTCTTTGAGCAATATGGAGATATCCGAACCACTTATACTGCCTGCAAGCATCGTGGATTTGTTATGATTTCTTATTATGACATAAGGGCAGCACAAAAAGCAATGAAAGCTCTGCAGAATAGGTCATTGAGGTCTAGGAAGCTTGACATACATTATTCAATACCAAAGGTCAATGCTCCAGAGAAGGATATTAGCCATGGTACGCTGTTGCTATCTGGTCTTGATTCTTCTGTTTCAAATGATGAGCTTCAACAAATTTTTGGATTTTATGGAGAAATTAAAGAAATGTTTGAATCACCAGAATTGAATCATCACAAATTTATAGAGTTTTATGATGTGCGAGCTGCAGAAGCTGCTCTTCGTGCTTTGAACAAGAGTGAAATTGCTGGGAAGCAGATCAAGCTTGAACCTGGCCATCCTAGGGGTTCAAATGCAACATGTCTGATGCAGCAGTCTCAGAAGGGGCAGGATGAATCTGATCTTGGTCAAAGTATATGTGACAACTCATCACTAAGAACAACGGCTAAAATGTCTTATGGATTAATTGCATCTGGCTGCTTGGATAATGGGTCTAGTCAGGGATTTCAATCACCAATACGGCCGACTATGGGTACCTTACCAATAAATGGATTTTCAAATGTGAATTCTGGCATTCATGCAGTGAGAGGGCCATCTGCTGGAAAAATTTCTAGTGTTCAGGAGTCTAGCAAATTTGTTGATGCTATGAAGTTTTCATCTATTCCTAGATTCCATCCTCATTCCCTCCCTGAGTATCATGATAGTTTAGCTAATGGCAGCCAATACAAGTTTTCAAGCTCCATCGGCAATGCGTCTGGCACTATTGGTCCTCCAGTGACAGAAGGCTGTGACAGCAGGCACATGCCAGGATTGGGTTCACCTGGGAAATTGACAGACTTTAATGGAGGAGGAAATGGAAACCACCCTAATCACGGGCTTTATCAAATGTGGAATGGCTCCAATTTGCACCAGCAACCTCCTCCAAGTCCAATACTTTGGCAGAAAAGGCCATCATTTGTTAATGGTGCTTGTGCTCCTTGTCTTCCACAGATGCCCAGCTTTCACAGAACATCACCTCATATGCTGAGAGCATCACATATCGACCACCATGTTGGATCAGCACCAGTTGTTACGGCCTCCCCGTGGGACAGGCAACATTGTTATTTGGCTGAGTCCCCTGAATCCTCTGGTTTTTGCATGGGTTCTCTTGGGAGTCCAGGTTTCCCTGGTACATGGCAAATGCATCCTCCAGAATTTTCTTCCCACATGTTTTCTCCTGTTGGTGGGAATGGCATGGATTTGTCACCCAATGGTCGGAAGAACTCCCCAAATCAGTTGTCACATGTTTTCCCTGGGAGACATCCTATGGCTTCAATGTCTAAATTTGATTCTACCAATGAGAGAATGAGAAACCTCTATCACCGTAGAAGTGATGCTAACACTAACAATGCTGATAAAAAGCAATTTGAACTTGACCTTGGCCGCATAATGTGTGGGGAAGACAACCGAACAACACTTATGATAAAGAATATTCCCAATAAGTATACTTCCAAGATGCTTCTTGCTGCCATAGATGAGCAATGCAAGGGAACTTACGACTTTTTGTACTTGCCAATTGACTTCAAGAACAAATGTAATGTTGGCTATGCATTCATCAACATGACTGATCCTGGTCAAATTATTCCTTTCCACCAGGCTTTTAATGGGAAAAAATGGGAGAAATTTAATAGTGAAAAGGTAGCCTCACTTGCATATGCTCGAATTCAGGGAAAAACTGCTCTGATTGCACATTTCCAGAATTCAAGCCTGATGAATGAAGACAAACGCTGCCGTCCTATTCTCTTCCATACAGAAGGCCCAAATGCTGGTGATCCGGAACCTTTCCCTATGGGTACCAATATTAGATCAAGACCTGGAAGAATTCGTACGAGCAGTAATAATGAAGAGAATCGCGGCTCAGGGAGTCCTTCGGCTTCGGCAAGTGGGGAGGTGTCTTCTAATGGAACTAGTTCTTCGGTGGGTTCTTCAAGAAACTCAGACTGA 3492 0.4258 MPPLLRHSLPHVVKLPFPLIGHEVVDVDEEEVKTVVESGEGVVDETKDGEDLNAVIQSKVSGVLVESETVEEETKEAFVVRVHEIGYGVCYSYCASHRQLAKEKNKFVVGSDGEQDNGTGRRESGMDQVPWRRRRPNGCGFGFGGVMMPSEIMDHRGASASSHFFDDVSFCSEFFHSVLNCIRLLLAFGIAIIGAASTLNPSVLNSQTNVFVSVEAKAFLMHFYYIFLSFGMTGVNCGGKNGMVASPGGILNAFSPREISAKTGWPMSNMGLSGEIGGEEGFVDIYTAFKESLNHHPRSQSDVSMQPAYNHYGLTGNKIVTNTASTESTLFSSSLSEIFPQKLRLTANDVLPHLPVTVGSLPEEEPYKSIKEIEADTIGNLLPDEDDLFSGVTDDLGYNTHTRTGDDLEDFDLFSSGGGMELEGDEHLSSGKRISGLDGDSGYLGGFKEKLPFVGHPSRTLFVRNINSNVEDSELKALFEQYGDIRTTYTACKHRGFVMISYYDIRAAQKAMKALQNRSLRSRKLDIHYSIPKVNAPEKDISHGTLLLSGLDSSVSNDELQQIFGFYGEIKEMFESPELNHHKFIEFYDVRAAEAALRALNKSEIAGKQIKLEPGHPRGSNATCLMQQSQKGQDESDLGQSICDNSSLRTTAKMSYGLIASGCLDNGSSQGFQSPIRPTMGTLPINGFSNVNSGIHAVRGPSAGKISSVQESSKFVDAMKFSSIPRFHPHSLPEYHDSLANGSQYKFSSSIGNASGTIGPPVTEGCDSRHMPGLGSPGKLTDFNGGGNGNHPNHGLYQMWNGSNLHQQPPPSPILWQKRPSFVNGACAPCLPQMPSFHRTSPHMLRASHIDHHVGSAPVVTASPWDRQHCYLAESPESSGFCMGSLGSPGFPGTWQMHPPEFSSHMFSPVGGNGMDLSPNGRKNSPNQLSHVFPGRHPMASMSKFDSTNERMRNLYHRRSDANTNNADKKQFELDLGRIMCGEDNRTTLMIKNIPNKYTSKMLLAAIDEQCKGTYDFLYLPIDFKNKCNVGYAFINMTDPGQIIPFHQAFNGKKWEKFNSEKVASLAYARIQGKTALIAHFQNSSLMNEDKRCRPILFHTEGPNAGDPEPFPMGTNIRSRPGRIRTSSNNEENRGSGSPSASASGEVSSNGTSSSVGSSRNSD 1163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1648 1163 CDD RRM1_MEI2_like 458 533 IPR034453 -
Bisa08g1648 1163 FunFam MEI2-like protein 5 isoform 2 448 542 - -
Bisa08g1648 1163 Gene3D - 542 640 IPR012677 -
Bisa08g1648 1163 SUPERFAMILY RNA-binding domain, RBD 988 1072 IPR035979 GO:0003676
Bisa08g1648 1163 Pfam RNA recognition motif 2 986 1082 IPR007201 -
Bisa08g1648 1163 Gene3D - 447 541 IPR012677 -
Bisa08g1648 1163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 461 525 IPR000504 GO:0003723
Bisa08g1648 1163 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 547 611 IPR000504 GO:0003723
Bisa08g1648 1163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 544 617 IPR000504 GO:0003723
Bisa08g1648 1163 MobiDBLite consensus disorder prediction 110 129 - -
Bisa08g1648 1163 MobiDBLite consensus disorder prediction 1097 1163 - -
Bisa08g1648 1163 MobiDBLite consensus disorder prediction 1120 1163 - -
Bisa08g1648 1163 MobiDBLite consensus disorder prediction 621 639 - -
Bisa08g1648 1163 FunFam Protein MEI2-like 1 543 639 - -
Bisa08g1648 1163 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 459 532 IPR000504 GO:0003723
Bisa08g1648 1163 PANTHER RNA RECOGNITION MOTIF-CONTAINING 304 1139 - -
Bisa08g1648 1163 SMART rrm1_1 988 1064 IPR000504 GO:0003723
Bisa08g1648 1163 SMART rrm1_1 545 613 IPR000504 GO:0003723
Bisa08g1648 1163 SMART rrm1_1 460 528 IPR000504 GO:0003723
Bisa08g1648 1163 MobiDBLite consensus disorder prediction 613 639 - -
Bisa08g1648 1163 SUPERFAMILY RNA-binding domain, RBD 457 619 IPR035979 GO:0003676
Bisa08g1648 1163 CDD RRM3_MEI2_like 989 1074 IPR034454 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1648 Bisa-ChrBisa08 38519727 38538084 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1648 456 711 Eukaryotic Initiation Factors Gene Family AT1G71770 22.968 2.78e-08 56.2