Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1641 ATGGCATCATCAGAGGTATCAATCAAGGGAAATTGTGTGAACGGGAAGGGGGAGAGCTACTCTTCTGCGTATAACAACAATAACGATGCTAGGAACGTTACAGACGGTCAAAATGCTCATTCATCGGCCGGTAGAGATGCGGAAGCCGCGCTTTACAGAGAGCTATGGCATGCCTGTGCCGGTCCTCTTGTCACAGTGCCGCGACAAGGAGAGCGGGTCTTCTATTTTCCTCAGGGACATATCGAGCAGGTGGAGGCATCCACGAATCAGGTGGCGGACGAGCATATGCCTGTGTACAATCTCCCTTCCAAAATCCTTTGTCGGGTGATCAACGTGAGCCTGAAGGCCGAGCCGGACACCGACGAGGTGTTTGCTCAGGTGACATTGGTTCCTGAGCTAAATCAAGACGAAAACGCCGTGGAGAAAGAGCCTCCACCACCCCCACCACCTCGATTTCACGTCCATTCGTTCTGTAAAACTCTGACGGCCTCTGATACGAGTACCCATGGTGGGTTTTCGGTTCTGAGACGACATGCCGATGAATGCCTTCCTCCACTGGACATGTCAAAGCAGCCACCTACCCAGGAGTTGGTTGCAAAGGATCTGCATAGCAATGAGTGGCGATTCAGGCATATCTTTCGCGGTCAACCGCGTAGACACTTGCTTCAAAGTGGTTGGAGTGTTTTTGTCAGTTCGAAGAGGCTTGTTGCTGGGGATGCATTTATATTTCTAAGGGGTGAGAATGGGGAACTGCGTGTTGGTGTCCGACGTGCCATGAGGCAGCAGGGTAATGTTCCATCCTCAGTGATCTCCACTCACAGTATGCATCTTGGTGTCCTTGCAACTGCTTGGCATGCCATCTCGACTTCTACCATGTTCACTGTTTATTACAAGCCTAGGACGAGTCCTGCTGAATTTATTGTCCCATATGATCAATACATGGAGTCCCTGAAAAATAACTATACCATAGGGATGCGATTCAAAATGAGGTTTGAAGGTGAAGAGGCTCCAGAGCAAAGGTTTACTGGTACCATTGTTGGCATTGAAGATGCTGACCCCAACAGGTGGGCGGAATCCAAATGGAGATGCCTCAAGGTGAGATGGGATGAAACATCTAACATACCTCGTCCTGAGAGGGTTTCCCCTTGGAAAATAGAGCCTGCTCTTGCTCCTCCAGCTTTGAATCCTCTTCCAATGCCCAGGCCTAAAAGGCCTCGGAATAATGTGGTTCCGTCATCACCTGATTCCTCTGTCCTTACTCGAGAAGCCTCATCTAAAGTAAGTTTAGACCCTTCACCGGCAAGTGGGTTTCCAAGGGTCTTGCAAGGTCAAGAATTCTCGACCTTGAGAGGCAATTTTGCAGAAAGCAATGAGTCCGTTAATGCAGAAAAGTCTGTTGCATGGCCAGCTGCAAGAGCTGGGTGTCTATGGGGAGGCATGAGCCAGTATATTCGGATCTACTATCAGGCTTTGGGGCTGGTGGAGATTCTACCCGTCCACCCTTGGTTGATCACTCTGGCCCTGCTGCTAGTCCTGCCAGAAAGCATTCACTGGACCATGAAGGAAAGTATAATGTGCTAG 1581 0.4991 MASSEVSIKGNCVNGKGESYSSAYNNNNDARNVTDGQNAHSSAGRDAEAALYRELWHACAGPLVTVPRQGERVFYFPQGHIEQVEASTNQVADEHMPVYNLPSKILCRVINVSLKAEPDTDEVFAQVTLVPELNQDENAVEKEPPPPPPPRFHVHSFCKTLTASDTSTHGGFSVLRRHADECLPPLDMSKQPPTQELVAKDLHSNEWRFRHIFRGQPRRHLLQSGWSVFVSSKRLVAGDAFIFLRGENGELRVGVRRAMRQQGNVPSSVISTHSMHLGVLATAWHAISTSTMFTVYYKPRTSPAEFIVPYDQYMESLKNNYTIGMRFKMRFEGEEAPEQRFTGTIVGIEDADPNRWAESKWRCLKVRWDETSNIPRPERVSPWKIEPALAPPALNPLPMPRPKRPRNNVVPSSPDSSVLTREASSKVSLDPSPASGFPRVLQGQEFSTLRGNFAESNESVNAEKSVAWPAARAGCLWGGMSQYIRIYYQALGLVEILPVHPWLITLALLLVLPESIHWTMKESIMC 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1641 526 CDD B3_DNA 155 257 IPR003340 GO:0003677
Bisa08g1641 526 Gene3D - 320 390 - -
Bisa08g1641 526 MobiDBLite consensus disorder prediction 391 439 - -
Bisa08g1641 526 MobiDBLite consensus disorder prediction 391 407 - -
Bisa08g1641 526 SMART B3_2 157 259 IPR003340 GO:0003677
Bisa08g1641 526 Gene3D - 154 259 IPR015300 -
Bisa08g1641 526 MobiDBLite consensus disorder prediction 409 431 - -
Bisa08g1641 526 Pfam Auxin response factor 283 365 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Bisa08g1641 526 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 50 450 IPR044835 GO:0003677|GO:0006355|GO:0009725
Bisa08g1641 526 FunFam Auxin response factor 155 259 - -
Bisa08g1641 526 MobiDBLite consensus disorder prediction 23 42 - -
Bisa08g1641 526 Pfam B3 DNA binding domain 157 258 IPR003340 GO:0003677
Bisa08g1641 526 SUPERFAMILY DNA-binding pseudobarrel domain 153 286 IPR015300 -
Bisa08g1641 526 ProSiteProfiles B3 DNA-binding domain profile. 157 259 IPR003340 GO:0003677
Bisa08g1641 526 MobiDBLite consensus disorder prediction 23 41 - -
Bisa08g1641 526 FunFam Auxin response factor 320 392 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1641 Bisa-ChrBisa08 38277789 38280942 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1641 1 471 B3 DNA Binding Superfamily AT5G62000 79.167 0.0 790
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3-ARF Bisa08g1641 B3 5.9e-21 CL0405