Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1503 ATGGCGGAGAAAAGTGGCAAGAAACCATTGAGCCTCAACGACAGCCATTATCGATTCCTCCAAGACCTCTCTGCTCCTCCTAAGCCCTCGTCAAAGCCATCTGATGACGAAGATAAGTCGTCCGCGGTAATGCTTCAAAGCCAAAGGCGACAAGGTGGCATATGTTTATCGAAGGACAGCAATAGCGAGGCGGATGATAGTATCCCCCGATTTTCTGCAATCACCGACTTCGATTCTCCGATTGAGCATCGCTCGGCGGAAGACGAAAAGCCGATCAAGGTAGAAGGCCGACGCCATCTCTGTAAAGTCTCGCCGAAGGATAATAGTAAAGATCAGGGTCATAATATTCCCCAGTCTGAAGAACTGACTGACTTTGACACCCACAAGGGGGAAAAGAAGACGAAGGTTAAAGTGGCAGGGCGACGCCGCCTATGCAAAGTGTCATATTCTGACGATGATAGTGCTGATAAAACGTTGCAGCATGATGAGTCAAAGCTTTCTGCCCTTGTGGATTTTGATTCTCCCCCTTTGCCATCGAAAAATGTAGTTGAGATTGATGAGGGTGGAGGTAGAAATGAAATTAGGGATATATTAAATGAGTTGAGCTCTAAGTTTGAGATTTTGTCAATTGAGAGGCCAAGAGTACCAAAATCAGTGCTGTTGGTTGAAGATTCTCCAGCATGTGTTAAGGGGAAGGAAACCTGGGAAGATCAGGCTGTTGATTATGCGAGTGCAGACTCTTCATTTTCACCGCAACAGGACCCCAGTGACAGTTCATCTGATGCAACTAAGAGTGCTGGTGGTGGTATTGAACTTGTAGAAGATGACTCAGACGATTCTGTTGAATTATTGGATCATTTTGACTCTAAGAATGTGAATTCTATAACTCTGAGTGGCCCGAATTCTACATACAAGTTACCAGGTAAAATTGCAAAAATGCTGTATCCACATCAGCGGGATGGCTTGAAGTGGCTCTGGTCTTTACATTGTCAGGGTAAGGGTGGAATCTTGGGAGATGACATGGGTTTGGGAAAGACAATGCAAATATGTGGCTTTCTAGCTGGGTTATTTCATTCTCGTTTAATTAGAAGGGCATTGGTTGTGGCACCAAAAACCTTACTCTCACACTGGATCAAAGAATTGTCAGCTGTTGGCCTCTCTGAGAAGACAAGAGAATACTTTGGAACGTCTACAAAAGCCCGAGAATATGAGCTTCAATACATACTTCAGGATAAAGGCGTTCTTCTCACAACATACGATATTGTTCGGAACAATTCTAAGTCACTACGGGGGGATCATCAAGCTGATGACGATGAAAATGAAGACAGCCCCATATGGGATTATATGATACTTGATGAAGGCCATCTTATAAAGAATCCAAGCACGCAGAGAGCTAAAAGTTTGCTTGAGATACCAAGTGCCCATCGCATTGTCATTAGTGGCACACCATTGCAAAATAATCTTAAGGAGCTGTGGGCCTTGTTCAATTTCTGTTGCCCTGAGTTGCTAGGTGATAAGAAATGGTTTAAAGAAAAATTTGAGTCAGCCATACTTCGTGGAAATGAAAAGAAAGCTTCTGACAGAGAGAAGCGTGTTGGTTCTTCTGTTGCAAAGGAGCTAAGAGATTGTATTCAGCCTTACTTTTTAAGAAGACTGAAGAGTGAGGTTTTTAATCAAGATGATAAGAGTACAACTGCAAAACTATCTCAGAAACAAGAGATCATTGTGTGGCTTCGATTGACCAGTATTCAGCGACATCTCTACGAAGCATTTCTGAGGAGTGAGATTGTTCTTTCAGCATTCGATGGCTCACCACTAGCTGCACTTACGATTTTGAAGAAAATATGTGATCATCCACTTCTGTTGACAAAGCGAGCAGCTGAAGATGTGTTGGAAGGGATGGATTCAATGCTAAAGCCAGAAGAGGTTAACGTTGCAGAGAAATTGGCTATGCACATAGCAGATGTTGCCGAAACAGATAAATTCAAAGCTGAGCATGACGTCTCGTGCAAAATATCTTTCATAATGTCATTATTGGATAATCTGATTCCAGAAGGGCATCGTGTGCTTATTTTCTCTCAAACTCGCAAGATGCTTAATCTTATTCAGGACTCCCTATCATCTGAAGGTTATGAATTTTTACGCATTGATGGAACAACGAAAGCCAGTGACAGAATAAGGATTGTTAATGATTTCCAAGAAGGTCTTGCAGCTCCCATATTTCTGTTGACATCTCAAGTTGGTGGCTTAGGGCTAACACTTACTAGTGCAGATCGTGTGATTGTGGTTGATCCTGCTTGGAACCCAAGCACGGATAACCAAAGTGTTGATCGTGCATATCGCATTGGTCAAAAGAAAGATGTTATTGTGTACAGATTAATGACATGTGGAACTGTTGAAGAAAAGATATACAGGAAGCAGATATATAAGGGGGGATTGTTTAAAACAGCAACAGAGCATAAAGAACAAATTCGGTATTTCAGCCAGCAGGATCTTAGAGAGCTTTTCAGTCTCCCAAAAGAGGGCTTTGATGTATCTGTTACTCAGAAGCAATTAGATGAGGAGCATGATTGCCAAGATACATTGGGTGACTCTTTTAAAGCACACATAGCGTTCTTGAAACGTCAAGGCATAGCTGGAGTTAGTCACCACAGCTTACTCTTCTCCAAAACAGCACCAGTTCAGGCTGCGCTTGAGGATGATGAAGTGACAAGGAATCCAGGGATTAGATATGTTGGAAATTCAGCATCCACTTCTTTTGAACGTATCACTGATGGAGCTGAGTTTGCTTTTAATCCAAAGGAAGTCAAAATGAGCAAAAAGGGTTCTTCTCCAAGCAGTGTTGGTAAATTGACTGAGTCCGAAATCAGGGATAAAATCAAACGGATTTCTCAGACACTAGCAAATAAGGCGATGATTTCTAGATTACCTGATGGAGGAGAAAAACTGCAGCAGCGGCTTGTTGAACTGAATTTAGATCTTACCAAATTGAAGATGGCAGAAGGAATCGAAGTTGATTTGGATAATATAACTCGGGAATTCCAAAGGGTAATGAATGTGTAG 3063 0.4218 MAEKSGKKPLSLNDSHYRFLQDLSAPPKPSSKPSDDEDKSSAVMLQSQRRQGGICLSKDSNSEADDSIPRFSAITDFDSPIEHRSAEDEKPIKVEGRRHLCKVSPKDNSKDQGHNIPQSEELTDFDTHKGEKKTKVKVAGRRRLCKVSYSDDDSADKTLQHDESKLSALVDFDSPPLPSKNVVEIDEGGGRNEIRDILNELSSKFEILSIERPRVPKSVLLVEDSPACVKGKETWEDQAVDYASADSSFSPQQDPSDSSSDATKSAGGGIELVEDDSDDSVELLDHFDSKNVNSITLSGPNSTYKLPGKIAKMLYPHQRDGLKWLWSLHCQGKGGILGDDMGLGKTMQICGFLAGLFHSRLIRRALVVAPKTLLSHWIKELSAVGLSEKTREYFGTSTKAREYELQYILQDKGVLLTTYDIVRNNSKSLRGDHQADDDENEDSPIWDYMILDEGHLIKNPSTQRAKSLLEIPSAHRIVISGTPLQNNLKELWALFNFCCPELLGDKKWFKEKFESAILRGNEKKASDREKRVGSSVAKELRDCIQPYFLRRLKSEVFNQDDKSTTAKLSQKQEIIVWLRLTSIQRHLYEAFLRSEIVLSAFDGSPLAALTILKKICDHPLLLTKRAAEDVLEGMDSMLKPEEVNVAEKLAMHIADVAETDKFKAEHDVSCKISFIMSLLDNLIPEGHRVLIFSQTRKMLNLIQDSLSSEGYEFLRIDGTTKASDRIRIVNDFQEGLAAPIFLLTSQVGGLGLTLTSADRVIVVDPAWNPSTDNQSVDRAYRIGQKKDVIVYRLMTCGTVEEKIYRKQIYKGGLFKTATEHKEQIRYFSQQDLRELFSLPKEGFDVSVTQKQLDEEHDCQDTLGDSFKAHIAFLKRQGIAGVSHHSLLFSKTAPVQAALEDDEVTRNPGIRYVGNSASTSFERITDGAEFAFNPKEVKMSKKGSSPSSVGKLTESEIRDKIKRISQTLANKAMISRLPDGGEKLQQRLVELNLDLTKLKMAEGIEVDLDNITREFQRVMNV 1020
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1503 1020 Gene3D - 573 869 IPR027417 -
Bisa08g1503 1020 FunFam Protein CHROMATIN REMODELING 24 293 571 - -
Bisa08g1503 1020 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 326 501 IPR014001 -
Bisa08g1503 1020 PANTHER SNF2/RAD54 FAMILY MEMBER 129 954 - -
Bisa08g1503 1020 Pfam Helicase conserved C-terminal domain 671 783 IPR001650 -
Bisa08g1503 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 567 851 IPR027417 -
Bisa08g1503 1020 MobiDBLite consensus disorder prediction 80 109 - -
Bisa08g1503 1020 CDD SF2_C_SNF 663 794 - -
Bisa08g1503 1020 SMART helicmild6 700 783 IPR001650 -
Bisa08g1503 1020 MobiDBLite consensus disorder prediction 44 68 - -
Bisa08g1503 1020 MobiDBLite consensus disorder prediction 244 265 - -
Bisa08g1503 1020 MobiDBLite consensus disorder prediction 1 134 - -
Bisa08g1503 1020 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 302 551 IPR027417 -
Bisa08g1503 1020 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 674 833 IPR001650 -
Bisa08g1503 1020 Coils Coil 980 1000 - -
Bisa08g1503 1020 SMART ultradead3 309 512 IPR014001 -
Bisa08g1503 1020 Gene3D - 290 572 IPR038718 -
Bisa08g1503 1020 MobiDBLite consensus disorder prediction 244 273 - -
Bisa08g1503 1020 Pfam SNF2-related domain 317 621 IPR000330 GO:0005524|GO:0140658
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1503 Bisa-ChrBisa08 32679529 32687860 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1503 314 837 RAD5 or RAD16-like Gene Family AT1G02670 24.274 6.49e-40 156
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Bisa08g1503 SNF2_N 4.9e-49 CL0023
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1503 08 32679529 32687860 Bisa08g1503 08 32679529 32687860 ECH