Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1494 ATGATGATGGTGGCTAACAGTTTTGATCTATGGCAAAAGGATGCTTTCTTTTCTGCGGCCGAGGAAGTGCAGGAATCAGCTGATAGAATGGAATCCACATACAGGGCATGGGTAAAAGAGAAGAGAGAACAACCAATTGCTAAGGAATTAGAGGAATTATGCAGGAAGATGCAAACTGCTTTGGGTACTACAAAATGGCAGTTGGAAGAGTTTGAGAAGGCTGTCAGGCTAAGCTACAGACATCTTGGTGATGACAAGAGAACCACTAGGCATAGGCAATTTATTTCGGCCATTGGAAACCAAATTTCCCATGTTGAAGCAGCATTGAGGGAATCTTTTATTGAGGAAGGTAGGCAACCCTTCCGATGGGTAAATCTGGATGATGAAGAGCGAGATGACTTTGCTGCATTTTTATCTGGAACTTCTCAGTCTATGCAGAGTGCTAAGGATGGATGCATAGAGCTTACTCCTTCCTTGAATAGTACTATTCCGGAGAAACAGGTCATCACAAAAGAGAGGAATTTTCATGTAAATGCTACCTGCAATGGAGATATCTTTAGTGATGAAAAAGCTTCAAAGGATGTCATTGCCATCAACAAGGATGTACAGTATATAGCAGACATAAAGGCAGATGCAGTTTCTGGAATTAGTGATGAGGTAGTTTCTCAAGCAGATGGAAAAACTAATATATGGAAGACAAGGAGTTTCCCAAATTTTGGGGAGTTAAAAATCTTAATTGCTGATGAAGATGAACAGACAAATAAACTCATGCATACTATTGATGGCAACCCTAAAGGAAAATGGTTCAAACCTGGCTTCTGGAAACATAAATGTGAAGAATATCCCCAGGTCATGCGAGCAGTAGATATGTTCAGTCAGCATTTTGGTCGGTTTGGTTGTTTCCAGAGACAATTTCATAGTCCACTTCAGTTGCGATATCGTTGTTCTGTTCCAGTTACACTTGCTCTAATGCTGACTATTTTTCTCATTGGTAAGGCTTCGTTTTCTTGTTCTTATAAAATTCTTAACCACTTAGAACTGTGTTCAGCAAATTTGAGATTGTTTTATGATTTTGTCATCTTTCTTTTTGGTGTCGAGGGCGATGCAGGGAAGGGTAGATTGAAGGGGAGGGTATGGACTCATGATTTGATCCATAACTTGACCCGAATCTCTAAGTTTTCATTCAACCCGAGCCCGACCTTGGCAAAAGACTTTGGATGTATGTGGAAATTGGCCTACATACCAACATTAGGAGTTAAAGCGTCTTTTGGGTCAACTGTGCATAAATGGCTGATTGGAGGTGCACGTGCTCTGCCGTCATCAGCAAACATCACTAGAGGGCCATTAGCGATGAAGAGGAAGAAGAAGACGAAGAAGCAGATCTCGACAGTGAGAGAGATAGGTGAGAGGGTGACAGGAAAGGTGAAGTGGTTCAATAATCAAAAGGGCTTTGGGTTCATAACTCCTGATGATGGCAGTGAGGTCCTCTTCGTGCATTCGTCTTCGATCTGCGGTGATGCGGGAGGGAACAGTTCCTACGGTTGCGGTGGCGGCTAA 1557 0.4232 MMMVANSFDLWQKDAFFSAAEEVQESADRMESTYRAWVKEKREQPIAKELEELCRKMQTALGTTKWQLEEFEKAVRLSYRHLGDDKRTTRHRQFISAIGNQISHVEAALRESFIEEGRQPFRWVNLDDEERDDFAAFLSGTSQSMQSAKDGCIELTPSLNSTIPEKQVITKERNFHVNATCNGDIFSDEKASKDVIAINKDVQYIADIKADAVSGISDEVVSQADGKTNIWKTRSFPNFGELKILIADEDEQTNKLMHTIDGNPKGKWFKPGFWKHKCEEYPQVMRAVDMFSQHFGRFGCFQRQFHSPLQLRYRCSVPVTLALMLTIFLIGKASFSCSYKILNHLELCSANLRLFYDFVIFLFGVEGDAGKGRLKGRVWTHDLIHNLTRISKFSFNPSPTLAKDFGCMWKLAYIPTLGVKASFGSTVHKWLIGGARALPSSANITRGPLAMKRKKKTKKQISTVREIGERVTGKVKWFNNQKGFGFITPDDGSEVLFVHSSSICGDAGGNSSYGCGGG 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1494 518 PRINTS Cold shock protein signature 473 488 IPR002059 GO:0003676
Bisa08g1494 518 PRINTS Cold shock protein signature 494 503 IPR002059 GO:0003676
Bisa08g1494 518 FunFam Syntaxin 10 11 112 - -
Bisa08g1494 518 ProSiteProfiles Cold-shock (CSD) domain profile. 470 518 IPR002059 GO:0003676
Bisa08g1494 518 Pfam Syntaxin 6, N-terminal 14 106 IPR015260 GO:0016020|GO:0048193
Bisa08g1494 518 SUPERFAMILY Nucleic acid-binding proteins 467 507 IPR012340 -
Bisa08g1494 518 Pfam 'Cold-shock' DNA-binding domain 472 506 IPR002059 GO:0003676
Bisa08g1494 518 CDD SNARE_NTD_STX6-like 14 109 - -
Bisa08g1494 518 CDD CSP_CDS 471 506 IPR002059 GO:0003676
Bisa08g1494 518 Gene3D - 452 513 IPR012340 -
Bisa08g1494 518 Gene3D - 11 113 - -
Bisa08g1494 518 PANTHER OS05G0443700 PROTEIN 5 329 - -
Bisa08g1494 518 SUPERFAMILY t-snare proteins 13 111 IPR010989 GO:0016020|GO:0016192
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1494 Bisa-ChrBisa08 32392492 32397231 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Bisa08g1494 Syntaxin-6_N 5.3e-19 No_clan