Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1404 ATGGAAGACAATATAGAAGCATGCAACACAGGGCTGTATCTCGGGCTGGGGATGGAAGGGTATGTTCCCAAGAAAAAGAAGCAGAAAGAGAATAAGCACGTGGATCGCTTGGACCTTCCCTTTGAGCTCTGTCCAAAACTGGAAAAACAAGCCCTGCATAGCATGGATCATGTAGAAGAAGACGCTGGGTTCAGTTTGAACAAAGTGGATGATCATATTAACACCAGCAATAATAATTGCAGAAAGAAACTAAGGCTCTCCAAGGAACAATCCGCCTTGCTTGAGGACAGCTTCAAGCTCCATAGCACTCTTAACCCAGCTCGGAAACAAGCACTGGCTAAGCAGTTGAATCTGATGCCCAGACAAGTCGAAGTTTGGTTTCAGAACAGAAGAGCAAGGACAAAGGTGAAGCAAACAGAGGTGGACTGTGAGGTGTTGAAGAAATGCTGCGAGAATCTAAGGGACGAGAATCGAAGATTGAAGAAAGAATTGCAAGAATTGCGGGCTCTAAAAGTTGGACCAATGTCGCCATTGTACATTCAACTCTCAAAGGCGGCCTCGCTGACGATGTGTTCGTCGTGTGAGAACCTATTCAAACCCAATGAACCCAAAAATAATAATAACCATAAATTCCAGAACGACAGAGTTTTGACTGCACAGATATGA 666 0.4444 MEDNIEACNTGLYLGLGMEGYVPKKKKQKENKHVDRLDLPFELCPKLEKQALHSMDHVEEDAGFSLNKVDDHINTSNNNCRKKLRLSKEQSALLEDSFKLHSTLNPARKQALAKQLNLMPRQVEVWFQNRRARTKVKQTEVDCEVLKKCCENLRDENRRLKKELQELRALKVGPMSPLYIQLSKAASLTMCSSCENLFKPNEPKNNNNHKFQNDRVLTAQI 221
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1404 221 Gene3D - 85 135 - -
Bisa08g1404 221 Coils Coil 136 170 - -
Bisa08g1404 221 Pfam Homeobox associated leucine zipper 137 170 IPR003106 GO:0006355|GO:0043565
Bisa08g1404 221 SMART halz 137 182 IPR003106 GO:0006355|GO:0043565
Bisa08g1404 221 MobiDBLite consensus disorder prediction 202 221 - -
Bisa08g1404 221 Pfam Homeodomain 81 135 IPR001356 GO:0003677
Bisa08g1404 221 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT14 11 208 - -
Bisa08g1404 221 CDD homeodomain 81 138 IPR001356 GO:0003677
Bisa08g1404 221 SUPERFAMILY Homeodomain-like 67 138 IPR009057 -
Bisa08g1404 221 SMART HOX_1 79 141 IPR001356 GO:0003677
Bisa08g1404 221 ProSiteProfiles 'Homeobox' domain profile. 77 137 IPR001356 GO:0003677
Bisa08g1404 221 ProSitePatterns 'Homeobox' domain signature. 112 135 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1404 Bisa-ChrBisa08 29771737 29772845 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1404 70 197 Homeobox Transcription Factor Family AT4G37790 71.875 1.11e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Bisa08g1404 Homeodomain 6.1e-16 CL0123