Gene search
Sequence information
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Bisa08g1374 | ATGACGGACCAGACCCAGTTCAGCGTTCTGTGCAGCCTCTTCACATGGATTCAGAGAAGCAAGTCATCGGCCAAGAAGCGCGCCAAGTTCCGCAAATTCCTCGATTCCTTCTGCACAGACAAAAATTATTTCAGCGCAATTCGATTGATTCTTCCCAATCTCGATCGAGAGCGAGGCTCCTATGGACTCAAGGAGTCGGTTCTAGCCACCTCCCTCATTGACGCTCTTGGGATGTCCAGGGAGTCCGAGGACGCTCTTCGTCTCATCAACTGGCGCAAAGGAGGTGCAAAGACCGGCGCCAATGCCGGGAATTTTTCTCTTGTTGCTGCTGAGGTGTTGCAGCTTAGGCAAGGGATGGCATCTGGTAGATTAACAATAAAGGAGTTAAATGACTTGCTTGATAAACTGGCTTCAAGTGAAAACAGGACCGAGAAGACTTCAGTTCTTTCTACCCTTATCCAAAAGACAAATGCACAGGAAATGAAGTGGATCATCATGATAATCCTCAAAGATCTAAAGCTTGGAATTAGTGAAAAAAGCATTTTCCATGAATTCCACCCAGATGCCGAAGACTTGTTTAATGTAACTTGTGACTTAAAATTAGTTTGTGAAAAGCTTAAGGATCGGAATCAACGTCACAAGCGGCAGGATATTGAAGTTGGAAAAGCTGTGCGCCCTCAACTAGCTAAGAGAGTTGCTAATGCACCTGAAGCATGGAAAAAGCTTCATGGGAAGGAAGTGGTTGTTGAGCGCAAGTTTGATGGTGATCGAATCCAAATTCATAAAAATGGAAGGGATGTACATTTCTTCTCAAGGAACTTTCTTGACCATTCAGAATATCGACATGCAATGTCAGACATCATAGTACATAATATTCTTGTTGACAGGTGTATTCTTGATGGTGAAATGTTGGTTTGGGACAAATCCTTGAACCGTTTTGCTGAATTTGGTTCAAATCAAGAAATAGCTAAGGCAGCAAGGGACGGGCTTGATAGTGATAGACAGTTATGCTACATTGCATTTGATATCCTTTATGGTGGAGATACTAGTGTAATTCACCAAAGCTTGAAGGAAAGACATGAGCTTCTCCGTGAAGTTGTGAGGCCCTTGAAGGGTAGTTTGGAAATTTTAATACCTAATGGTGGTCTTAACACTCACCGTCCCTCTGGGGAACCTTGTTGGTCATTTGTTGCTTGCAATATGGATGAAGTTGAGAGATTTTTCAAAGAAACTATTGAGAATAGAGATGAGGGAATTGTTCTGAAAGACCTTGGTTCCAAATGGGAACCTAGTGACCGTAGTGGAAAGTGGATGAAATTGAAGCCTGAGTACATACAAGCTGGTTCTGATATGGATGTGCTTATCATAGGTGGCTATTATGGCTCTGGACGTCGAGGAGGGGAGGTTGCTCAGTTCTTGGTGGGACTTGCAGAGCATCCATCCCCAAATACACATCCCAAGCGATTTATCTCCTTTTGTAGAGTTGGTACTGGACTTTCCGATGATGAGCTTGATGCTGTAGTGACCAAACTGAAACCGTACTTCAGGAAGTATGAATACCCAAAGAAGAGGCCACCAAGTTTTTATCAAGTTACTAATCATTCAAAAGAACGGCCTGATGTGTGGATTGATAGCCCTGATAAATCGATAATTCTCTCTATAACCAGTGATATTCGAACTATACAATCTGAGGTATTTGCTGCACCTTACAGTTTGAGATTTCCTCGGATTGACAGGGTCAGATATGACAAGCCGTGGTATGAATGCCTCAATGTGCAATCATTTATAGAACTAGTGCATTCCAGCAATGGCACCACAAAGGGGGGTACAGAATATGACGGCAAGCAGGATAGTAAATCGAAACACATGAAATCCTCTAAAAGGGGAGAAAAGAAAAACATGTCCATTGTCCCTTCTCATTTAATTCAGACTGATGTATCCAGTGTTAAGGGAGGCTCCTCAATATTCTCAAATATGATGTTTTATTTTGTTAATGTACCTCCATCTCATTCTCTTAATTCCTTGCATAAGATGGTTGCTGAGAATGGTGGAACTTTCTCAATGAATTTGAATAATTCAGTCACCCATTGTGTTGCAGCAGATAGCAAGGGTTTTAAATTTGAAGCAGCAAAACGTCGTGGCGATGTCATCCATTATAGTTGGGTAGTAGATTGTTGTATGCAAAGGAAGCTTGTCCCCTTACAGCCTAAGTACTTCCTCTTCCTTTCTGAACTCTCAAAGAAGAAATTACATGAAGAAATTGATGAGTTCTCAGACTCTTACTACTTGGATCTTGAACTTGCAGACATCAAGCAGCTTTTAAGCAATATTCACAGATCAAAAGAAGATATCGGCTCCATTGACTATTACAGGAAAAAATACTGCCCCAAGGATAAGTGGTCTCTCTTTCTCGGATGCTCCATTTATTTCCACATTTTGATACCGCCTTTGAAAGGAGATTGGGAAGTTCTGTTAGGACTTTCTCAGCGGAGACTGCAGTTTGAAATTCTAACGAGTGGTGGCAAAGTTACCAATATTCCTACTTATGCTACCCATTTTGTCACCTTATCGATGCCAGGATATAATGTGGAGTTTGGAGAAATGCTAAGAAGCTTCACTTCAGTAGAAAGAAAATTTCTTTCGAGTAAAAAGTTGCACGTCGTTGGATCCCAGTGGCTTGAAGACTGTTTTGAACATGGCCAAAGGTTACCAGAAGAAGCATATACATTGAAACCCAATGGAATAGAAGAATCAACTGCTGAAGGCTGCACACATGACATGGCTTTAGAGGGTCATTTTGGTGAAGTGAATGTAGATGACCAAAATTTGTCACTTGTCTCTGAAAAGGGAAGTAAGCAGAGAAGTACAAAAGCAGTTTATGAAGACCCTATGGCCGTGGTGCCCCCGGAGAAGGGCGGGAAAAGGAAACGAGGAAGACCTGCTGGCAGAGGCAGAGGGAGTACAAAAGCGAAAATAGCTGGCAACCAAACTCTCAGAGCGCGAGCACGTGTTGGTAAAAGGCCTGCCAAAATAAGTGAATATGAAACAGATGAAAGTAGTTCTCATGATGAAAAACCATGTGAAGATGAGATTGGCTTAAGAGAAGTCAGTCTTGACTCTTACGAGAAACCCTTAGAAACCCGAGAGATGGAGAAAAGTGGAGAAGTCCCAGAGACTGAAATATTACAATATTCTGAACCATCAAGAAGAGAAGACGCAGTTAAGCAAGTAGCTTCAAAGGAAGTTGAACATGTGGAACAGTCCGTTCCTGAAATTGAAATGACCGAACGGCACAATGATCGAAACAGTAACACACAGAAACTTGAAACTATGGCTGATCCAATACAGGCAATGTTATTTGACATGATTCCTAGCCTTGCTACAAAGAAAGTTGATGAAACTAGGAATTATAATGTTGAAACTGAGAAGCCACCAGAGTACTCCAATGCAGAGCCTTCTAAGAAAAAGAAAGTCAGCTACAGGGATGTTGCTAGTGAGCTGCTCAAGGATTGGTAG | 3516 | 0.4201 | MTDQTQFSVLCSLFTWIQRSKSSAKKRAKFRKFLDSFCTDKNYFSAIRLILPNLDRERGSYGLKESVLATSLIDALGMSRESEDALRLINWRKGGAKTGANAGNFSLVAAEVLQLRQGMASGRLTIKELNDLLDKLASSENRTEKTSVLSTLIQKTNAQEMKWIIMIILKDLKLGISEKSIFHEFHPDAEDLFNVTCDLKLVCEKLKDRNQRHKRQDIEVGKAVRPQLAKRVANAPEAWKKLHGKEVVVERKFDGDRIQIHKNGRDVHFFSRNFLDHSEYRHAMSDIIVHNILVDRCILDGEMLVWDKSLNRFAEFGSNQEIAKAARDGLDSDRQLCYIAFDILYGGDTSVIHQSLKERHELLREVVRPLKGSLEILIPNGGLNTHRPSGEPCWSFVACNMDEVERFFKETIENRDEGIVLKDLGSKWEPSDRSGKWMKLKPEYIQAGSDMDVLIIGGYYGSGRRGGEVAQFLVGLAEHPSPNTHPKRFISFCRVGTGLSDDELDAVVTKLKPYFRKYEYPKKRPPSFYQVTNHSKERPDVWIDSPDKSIILSITSDIRTIQSEVFAAPYSLRFPRIDRVRYDKPWYECLNVQSFIELVHSSNGTTKGGTEYDGKQDSKSKHMKSSKRGEKKNMSIVPSHLIQTDVSSVKGGSSIFSNMMFYFVNVPPSHSLNSLHKMVAENGGTFSMNLNNSVTHCVAADSKGFKFEAAKRRGDVIHYSWVVDCCMQRKLVPLQPKYFLFLSELSKKKLHEEIDEFSDSYYLDLELADIKQLLSNIHRSKEDIGSIDYYRKKYCPKDKWSLFLGCSIYFHILIPPLKGDWEVLLGLSQRRLQFEILTSGGKVTNIPTYATHFVTLSMPGYNVEFGEMLRSFTSVERKFLSSKKLHVVGSQWLEDCFEHGQRLPEEAYTLKPNGIEESTAEGCTHDMALEGHFGEVNVDDQNLSLVSEKGSKQRSTKAVYEDPMAVVPPEKGGKRKRGRPAGRGRGSTKAKIAGNQTLRARARVGKRPAKISEYETDESSSHDEKPCEDEIGLREVSLDSYEKPLETREMEKSGEVPETEILQYSEPSRREDAVKQVASKEVEHVEQSVPEIEMTERHNDRNSNTQKLETMADPIQAMLFDMIPSLATKKVDETRNYNVETEKPPEYSNAEPSKKKKVSYRDVASELLKDW | 1171 |
Annotation information
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Bisa08g1374 | 1171 | Gene3D | - | 444 | 605 | IPR012340 | - | |
| Bisa08g1374 | 1171 | CDD | Adenylation_DNA_ligase_IV | 214 | 446 | IPR044125 | GO:0005524 | |
| Bisa08g1374 | 1171 | PANTHER | DNA LIGASE 4 | 3 | 1164 | IPR029710 | GO:0003677|GO:0003910|GO:0005524|GO:0006281|GO:0051103 | |
| Bisa08g1374 | 1171 | Pfam | ATP dependent DNA ligase C terminal region | 465 | 584 | IPR012309 | GO:0003910|GO:0006281|GO:0006310 | |
| Bisa08g1374 | 1171 | ProSiteProfiles | BRCT domain profile. | 651 | 739 | IPR001357 | - | |
| Bisa08g1374 | 1171 | Gene3D | DNA ligase/mRNA capping enzyme | 220 | 443 | - | - | |
| Bisa08g1374 | 1171 | FunFam | DNA ligase | 444 | 605 | - | - | |
| Bisa08g1374 | 1171 | ProSiteProfiles | ATP-dependent DNA ligase family profile. | 329 | 478 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Bisa08g1374 | 1171 | SUPERFAMILY | ATP-dependent DNA ligase DNA-binding domain | 3 | 207 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Bisa08g1374 | 1171 | CDD | BRCT_DNA_ligase_IV_rpt1 | 655 | 741 | - | - | |
| Bisa08g1374 | 1171 | ProSitePatterns | ATP-dependent DNA ligase AMP-binding site. | 250 | 258 | IPR016059 | GO:0003909 | |
| Bisa08g1374 | 1171 | Pfam | DNA ligase N terminus | 7 | 186 | IPR012308 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 1082 | 1106 | - | - | |
| Bisa08g1374 | 1171 | NCBIfam | ATP-dependent DNA ligase | 61 | 599 | IPR000977 | GO:0003910|GO:0005524|GO:0071897 | |
| Bisa08g1374 | 1171 | ProSiteProfiles | BRCT domain profile. | 798 | 910 | IPR001357 | - | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 966 | 1070 | - | - | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 1006 | 1056 | - | - | |
| Bisa08g1374 | 1171 | Gene3D | - | 1 | 218 | IPR036599 | GO:0003677|GO:0003910|GO:0006281|GO:0006310 | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 612 | 631 | - | - | |
| Bisa08g1374 | 1171 | Pfam | ATP dependent DNA ligase domain | 226 | 441 | IPR012310 | GO:0003910|GO:0005524|GO:0006281|GO:0006310 | |
| Bisa08g1374 | 1171 | Gene3D | BRCT domain | 798 | 910 | IPR036420 | - | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 606 | 631 | - | - | |
| Bisa08g1374 | 1171 | FunFam | DNA ligase | 666 | 780 | - | - | |
| Bisa08g1374 | 1171 | SUPERFAMILY | BRCT domain | 290 | 740 | IPR036420 | - | |
| Bisa08g1374 | 1171 | SUPERFAMILY | DNA ligase/mRNA capping enzyme, catalytic domain | 185 | 442 | - | - | |
| Bisa08g1374 | 1171 | SMART | BRCT_7 | 653 | 729 | IPR001357 | - | |
| Bisa08g1374 | 1171 | SMART | BRCT_7 | 814 | 900 | IPR001357 | - | |
| Bisa08g1374 | 1171 | CDD | OBF_DNA_ligase_IV | 448 | 590 | - | - | |
| Bisa08g1374 | 1171 | FunFam | DNA ligase | 1 | 218 | - | - | |
| Bisa08g1374 | 1171 | SUPERFAMILY | Nucleic acid-binding proteins | 449 | 600 | IPR012340 | - | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 1082 | 1104 | - | - | |
| Bisa08g1374 | 1171 | Pfam | BRCT domain, a BRCA1 C-terminus domain | 653 | 736 | IPR001357 | - | |
| Bisa08g1374 | 1171 | SUPERFAMILY | BRCT domain | 795 | 912 | IPR036420 | - | |
| Bisa08g1374 | 1171 | ProSitePatterns | ATP-dependent DNA ligase signature 2. | 417 | 441 | IPR016059 | GO:0003909 | |
| Bisa08g1374 | 1171 | MobiDBLite | consensus disorder prediction | 1132 | 1160 | - | - | |
| Bisa08g1374 | 1171 | Coils | Coil | 126 | 146 | - | - | |
| Bisa08g1374 | 1171 | Gene3D | BRCT domain | 666 | 779 | IPR036420 | - |
Functional genes information
| Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|
| Bisa08g1374 | 214 | 601 | Core DNA Replication Machinery Family | AT1G08130 | 27.047 | 3.80e-28 | 120 |