Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1359 ATGCGTTCGTCGTTTTCAGAGTCAGAGACAGAGGAGGAGGAGAGAGACGAGAAGGCCATAATGACGACTTCGTCAGGAACGCAAACGGTGAAGGTCCTGAGGACGAAGCTGACGTCATGCTTGACTTGTCCTTTGTGCCATGACTTCTTCAGAGACGCCACCACTGTATCAGAATGCTTGCACACCTTTTGCAAGGATTGCATATATAAGAAGCTAATAGAAGAGTTTTTGAGGCACTGTCCAGTATGCAAAGTAGAGCTTGGTTGCACTCCACTTGACAAACTAAGATATACATGTTCGAATAATCAAGCTCTATCAGCTGGTAAAGCTGGTGTCTTTATTCCAATGCAATCGATGCACTGGATCATTAGTCTGCCAGATCACAATCTGCAAGATTTGAGGGAGAAACTTTTCCCCAATGAAGGAAAAAGTGCTGAGGAAAAACCAGCCTATGTGCCTCCATTTCCATTGCCAACCAGAAGAAAGGAGAGATCTCTGTCTTCATTAAGGGCCAATCCATCTAAGCTTTCAAGCCACTCTAGTATATTTGCGAGAAGAGCAAAAGCTGCTGCCAAGAAAGCTTCTGCTGGAAAAGAACCTGCTCAGTCTTCGGCTCAACCTGATAAAGTATCACATGGTAAGAAAGATGAAAGAAACAGTGATGTAGAAATTTTGGAAGAGGCTCCTAAAAATTTATCAAGAGCAAAAGCTGCAGCAAGACGAAAAATCATTCCAAGAGAATTCATTGCCTCCACTAGTCAACCTGACCAGTTAGCAGTAGATAATGGGAAAGACCAGCAGCAATTAGAGCTTCAGACTAGAAATGTAATGAGTGGAGTCAAGAATTCTTCAGAACCAGATTTGAGCCACCAAGTTGTGCCTAATGAGATTCCTGAGAACAATACTGAGTTATGGAAAGTAAAGAGTAATACGTGGAAGCCCTTTAATTGCCTGATGGAAGCCGCGAGAAAAACTAAGCATACTGAGTCCATAGTGCAACAAAATGCAGTCATTGCACTGCCTGCTCCTACTTCTTGTGACAATGACTCCCGCGCGCCTGCAATTCAAGTTAAGAACAAAATAACAATAGCAGGTGATCAAAATGAGGCGACTCCAGTTCAACCACATCGCCTCAAAACTAGAAGGTTGAGGAGCACCCAACAAAGAAGAGTCAGATTTGCTCAGGATTTAAATCTTCCAGCTGTGCAACCTGCGGTTGAATCAAACAGTAAAAGCAACGAAAGACCTCATCCAGTATGGTTCTCCTTGGTTGCTTCTGAAGAGAAGGAGGTTCATGCGAGACTGCCACAGATTCCTCCCTGCTACATAAGGATCAAGGATGGCAGTTTACCTGTTTCATTCATCAAAAAGTATATCATGAAGAAGCTCGATCTTGCAAGCGAAGCTGAGGTGGAGATCTCTTTACAAGGAAAGCCAGTTCTGTCATCAATGAAACTGCAGAACGTAGTAGAGATGTGGTTAGAGACGGTGCCGAGGTCTGAGAAGATACAGTCCTATGTTGGCAGCTCAGCGAAAGATTTTGTGATGGTTCTTTCGTATGGTCGCCGGGCTGTGTCCTCATGA 1584 0.4394 MRSSFSESETEEEERDEKAIMTTSSGTQTVKVLRTKLTSCLTCPLCHDFFRDATTVSECLHTFCKDCIYKKLIEEFLRHCPVCKVELGCTPLDKLRYTCSNNQALSAGKAGVFIPMQSMHWIISLPDHNLQDLREKLFPNEGKSAEEKPAYVPPFPLPTRRKERSLSSLRANPSKLSSHSSIFARRAKAAAKKASAGKEPAQSSAQPDKVSHGKKDERNSDVEILEEAPKNLSRAKAAARRKIIPREFIASTSQPDQLAVDNGKDQQQLELQTRNVMSGVKNSSEPDLSHQVVPNEIPENNTELWKVKSNTWKPFNCLMEAARKTKHTESIVQQNAVIALPAPTSCDNDSRAPAIQVKNKITIAGDQNEATPVQPHRLKTRRLRSTQQRRVRFAQDLNLPAVQPAVESNSKSNERPHPVWFSLVASEEKEVHARLPQIPPCYIRIKDGSLPVSFIKKYIMKKLDLASEAEVEISLQGKPVLSSMKLQNVVEMWLETVPRSEKIQSYVGSSAKDFVMVLSYGRRAVSS 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1359 527 MobiDBLite consensus disorder prediction 1 21 - -
Bisa08g1359 527 SUPERFAMILY RING/U-box 37 92 - -
Bisa08g1359 527 ProSiteProfiles Zinc finger RING-type profile. 43 84 IPR001841 -
Bisa08g1359 527 MobiDBLite consensus disorder prediction 1 20 - -
Bisa08g1359 527 ProSitePatterns Zinc finger RING-type signature. 59 68 IPR017907 -
Bisa08g1359 527 Pfam Zinc finger, C3HC4 type (RING finger) 43 83 - -
Bisa08g1359 527 CDD RING-HC_PCGF 41 83 - -
Bisa08g1359 527 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 27 153 IPR013083 -
Bisa08g1359 527 SMART ring_2 43 83 IPR001841 -
Bisa08g1359 527 MobiDBLite consensus disorder prediction 209 234 - -
Bisa08g1359 527 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 28 523 IPR044807 GO:0004842
Bisa08g1359 527 MobiDBLite consensus disorder prediction 142 235 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1359 Bisa-ChrBisa08 27873654 27878396 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1359 26 446 C3H Transcription Factor Family AT2G30580 31.116 4.44e-45 160