LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Bisa08g1350	ATGGCTCAAGACCCGTCATGTATGTCCTCTAGGAATGCGTGCCCATTACTTCCACTTCTCTATTGTTGTGACCCCTGTGGTTTTATAACTGCTCTTCTCACTTCCTTTTGTTTCTTCTCTATTGCTACAGATAACAGTGAGTGGGAGTTTCAGAAATACGCTCTAAACTATTCACTTTTGCTTGTTTTATGGATTTATTATGATTTAGAAAGGCTTTTGGTGTTATATGACATGCAGAGACAAGCGGCTCCAAGTAGGGTTCTCTGTGCTGCTTGCTCCTACAGCCGTCGGCTACAAAGGCGAAGGAGCTTCCTCTTATCAGCAACTTCAGTCATGGCGGTCGGAAAAAACAAGAGGATTTCCAAGGGGAAGAAGGGTGGCAAGAAGAAGGCTGCTGATCCATTTGCCAAGAAGGATTGGTACGACATTAAGGCCCCTTCTGTGTTCAAAGTGAAAAATGTGGGCAAGACCCTCGTCACTCGCACTCAGGGGACCAAGATTGCTTCAGAAGGGCTCAAACATAGAGTGTTTGAGGTTTCCTTGGCTGATCTACAAGGCGATGAAGACCATGCATACAGGAAGATTCGGTTGAGAGCAGAGGATGTTCAAGGGAAGAATGTTCTGACAAATTTCTGGGGAATGGATTTCACAACTGACAAGTTGAGGTCATTGGTACGGAAATGGCAAACTCTGATAGAAGCACATGTGGATGTGAAGACAACTGATAATTACACATTGAGGCTGTTCTGCATTGGATTTACTAAGAGGCGTACAAATCAGGTGAAAAGGACCTGTTATGCACAATCAAGCCAGATTAGACAGATCCGCCGGAGGATGAGGGAGATCATGGTAAATCAGGCAACATCCTGTGATTTGAAAGAGTTGGTCCTCAAGTTCATACCTGAGATGATTGGCAAAGAGATTGAGAAGGCAACATCTAGCATTTACCCTCTGCAAAATGTATTCATTAGGAAAGTCAAGATTTTGAAAGCTCCCAAGTTTGATCTTGGAAAACTGATGGAGGTTCACGGTGATTATTCAGAAGATGTGGGTGTGAAGGTAGATAGATCTGCCGAAGAAACAATGGCTGAGGCCACAACTGAAGTCGTTGGAGCTTGA	1119	0.4415	MAQDPSCMSSRNACPLLPLLYCCDPCGFITALLTSFCFFSIATDNSEWEFQKYALNYSLLLVLWIYYDLERLLVLYDMQRQAAPSRVLCAACSYSRRLQRRRSFLLSATSVMAVGKNKRISKGKKGGKKKAADPFAKKDWYDIKAPSVFKVKNVGKTLVTRTQGTKIASEGLKHRVFEVSLADLQGDEDHAYRKIRLRAEDVQGKNVLTNFWGMDFTTDKLRSLVRKWQTLIEAHVDVKTTDNYTLRLFCIGFTKRRTNQVKRTCYAQSSQIRQIRRRMREIMVNQATSCDLKELVLKFIPEMIGKEIEKATSSIYPLQNVFIRKVKILKAPKFDLGKLMEVHGDYSEDVGVKVDRSAEETMAEATTEVVGA	372

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Bisa08g1350	372	PANTHER	40S RIBOSOMAL PROTEIN S3A	108	365	-	-
	Bisa08g1350	372	SMART	Ribosomal_S3Ae_2	126	332	IPR001593	GO:0003735\|GO:0005840\|GO:0006412
	Bisa08g1350	372	ProSitePatterns	Ribosomal protein S3Ae signature.	172	184	IPR018281	GO:0003735\|GO:0005840\|GO:0006412
	Bisa08g1350	372	Hamap	40S ribosomal protein S1 [RPS3A].	112	369	IPR027500	GO:0003735\|GO:0005840\|GO:0006412
	Bisa08g1350	372	Pfam	Ribosomal S3Ae family	127	332	IPR001593	GO:0003735\|GO:0005840\|GO:0006412

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Bisa08g1350	Bisa-ChrBisa08	27764470	27770471	Proximal

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Bisa08g1350	112	372	Cytoplasmic Ribosomal Protein Gene Family	AT4G34670	85.496	1.17e-160	449