Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1308 ATGGGAATCCCTTCTTCCATATCTGATGAAGACGAAAGAGAACGCCATTTTGGGGTTGTTGGGTCTGGTGAGGTGTGGAGGGGAGAGAGTAGCCATGGATGTGAGAGTGAGAGCTTTGGGGGATTCAATGGGATTGTAGATGTGGAAGAGAATGACGACGCCAAAGGGAAGAGTAAAGCGACGTTATTGGCGCCGCCGTTGGATTTATCATCGCTTATATCATATAACCCCTTCTCCCTCCAAAACACAACTCTGAAATTAGGGTTTGAAGACTTACAGCCACGACCACGGCAACGGCAAAGGCGGCAACCTTTGAGTTTTGTATATTTTGCCCCTGCATCTTCATTCCGCTATCCACTTGCGACAATGGCGACCCAGATGAGTAAGAAGAGAAAGTTTGTGGCCGATGGAGTTTTCTTTGCTGAGTTAAATGAGGTTCTGACAAGAGAGCTTGCTGAAGATGGATACTCCGGCGTCGAGGTTAGGGTTACCCCGATGCGCACTGAGATCATTATCAGAGCCACTCGAACTCAGAATGTTCTTGGTGAGAAGGGAAGGAGAATCAGGGAGATGACTTCAGTTGTACAGAAGAGATTTAAGTTTCCCGAAAATAGTGTCGAACTATATGCTGAAAAGGTCAACAACAGGGGTCTCTGCGCTATTGCCCAGGCAGAGTCTCTTCGCTACAAGCTTCTTGGTGGTCTTGCTGTAAGGAGGGCTTGCTATGGTGTTCTGAGATTTGTTATGGAAAGTGGCGCCAAAGGATGTGAGGTTATTGTTAGTGGAAAATTGAGGGCTCAGAGAGCCAAATCCATGAAGTTCAAGGATGGATACATGATTTCTTCTGGGCAGCCAGTCAAGGATTACATTGACTCTGCAGTAAGACATGTACTTCTTAGACAGGGTGTTCTTGGTATCAAGGTCAGGATCATGCTTGATTGGGATCCTAAGGGGAAGCAAGGTCCCAAAACTCCCCTCCCTGATATTGTCACAATCCACCCTCCAAAGGAAGAGGAGGAATACATCAAGCCTGCTCCTGTTTTGGCAACTGATATTGAGGTCCCTGTTCCTGTTGCTTGA 1080 0.4704 MGIPSSISDEDERERHFGVVGSGEVWRGESSHGCESESFGGFNGIVDVEENDDAKGKSKATLLAPPLDLSSLISYNPFSLQNTTLKLGFEDLQPRPRQRQRRQPLSFVYFAPASSFRYPLATMATQMSKKRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLGEKGRRIREMTSVVQKRFKFPENSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFVMESGAKGCEVIVSGKLRAQRAKSMKFKDGYMISSGQPVKDYIDSAVRHVLLRQGVLGIKVRIMLDWDPKGKQGPKTPLPDIVTIHPPKEEEEYIKPAPVLATDIEVPVPVA 359
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1308 359 Pfam Ribosomal protein S3, C-terminal domain 228 310 IPR001351 GO:0003735|GO:0006412
Bisa08g1308 359 SUPERFAMILY Ribosomal protein S3 C-terminal domain 215 313 IPR036419 -
Bisa08g1308 359 SUPERFAMILY Prokaryotic type KH domain (KH-domain type II) 132 221 IPR009019 GO:0003723
Bisa08g1308 359 Gene3D - 215 341 IPR036419 -
Bisa08g1308 359 CDD KH-II_40S_S3 127 217 - -
Bisa08g1308 359 ProSitePatterns Ribosomal protein S3 signature. 269 305 IPR018280 -
Bisa08g1308 359 PANTHER 30S/40S RIBOSOMAL PROTEIN S3 128 320 - -
Bisa08g1308 359 NCBIfam 30S ribosomal protein S3 130 332 IPR005703 GO:0003735|GO:0006412|GO:0015935
Bisa08g1308 359 ProSiteProfiles Type-2 KH domain profile. 143 214 IPR004044 GO:0003723
Bisa08g1308 359 Gene3D - 120 213 IPR015946 -
Bisa08g1308 359 Pfam KH domain 142 215 IPR004044 GO:0003723
Bisa08g1308 359 FunFam 40S ribosomal protein S3 123 214 - -
Bisa08g1308 359 FunFam 40S ribosomal protein S3 215 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1308 Bisa-ChrBisa08 26793742 26797645 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1308 123 355 Cytoplasmic Ribosomal Protein Gene Family AT5G35530 87.554 6.80e-151 423