Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1289 ATGCGGATTCAATCACCGAGTTTGGTCCGCCAGCACGGTCAAGTCTTCTTCGCTTTTTCTCCGATCAAAAACCAATCATCATTGAAAGTCATGGCAGGAGTAGCACCCGAGGGATCACAATATGATGCTCGACAGTATGATTCCAAAATGAATGAGTTGCTTACAGCTGATGGACAAGATTTCTTTACATCGTATGACGAGGTTTATGATAGTTTTGATGTTATGGGCTTGCAAGAGAATCTTCTCAGAGGCATTTATGCATATGGATTTGAGAAGCCATCAGCTATTCAGCAGAGAGGAATAGTTCCGTTTTGCAAGGGACTTGATGTTATCCAGCAGGCTCAGTCTGGAACTGGGAAGACAGCAACTTTCTGCTCTGGGATCTTGCAGCAGCTCGACTATGGTTTGATAGAATGCCAGGCCTTGGTTCTAGCACCAACTCGAGAGCTTGCTCAGCAGATTGAGAAGGTTATGCGTGCACTTGGAGACTATCTTGGTGTTAAGGTGCATGCCTGTGTGGGAGGAACCAGTGTTCGTGAAGACCAACGTATTCTATCAAGTGGTGTTCATGTTGTTGTTGGTACTCCTGGTCGTGTATTTGATATGCTGCGGAGGCAGTCACTTCGGCCAGATTGCATCCGGATGTTTGTATTGGATGAGGCTGATGAAATGCTTTCTCGAGGTTTTAAAGATCAGATCTATGATATATTCCAGCTACTTCCATCCAAGATTCAGGTGGGAGTTTTTTCTGCTACAATGCCTCCTGAAGCTCTTGAGATCACTAGGAAGTTTATGAACAAACCTGTTAGGATCCTTGTGAAGCGTGATGAGCTCACCTTGGAGGGTATTAAACAGTTCCATGTTAATGTTGAGAGAGAGGAATGGAAGCTGGATACTCTCTGCGATCTTTATGAGACATTAGCCATCACTCAGAGTGTCATTTTTGTGAATACCAGAAGGAAGGTTGACTGGCTTACTGACAAGATGAGAAGCCGGGACCACACAGTTTCAGCAACCCATGGAGACATGGACCAGAATACCAGAGACATTATTATGCGTGAATTCCGTTCTGGATCTTCTCGTGTCTTAATAACGACTGATCTTTTGGCCCGCGGTATTGATGTCCAGCAAGTGTCACTAGTTATTAATTATGATCTCCCTACTCAGCCTGAGAACTATCTCCATCGTATTGGCCGGAGTGGGAGGTTTGGTAGGAAAGGTGTTGCAATCAATTTCGTGACAAAGGATGATGAAAGAATGCTGTTTGATATCCAGAAGTTTTATAATGTGATAATTGAGGAGCTGCCATCCAATGTTGCTGAACTCCTCTAA 1332 0.4422 MRIQSPSLVRQHGQVFFAFSPIKNQSSLKVMAGVAPEGSQYDARQYDSKMNELLTADGQDFFTSYDEVYDSFDVMGLQENLLRGIYAYGFEKPSAIQQRGIVPFCKGLDVIQQAQSGTGKTATFCSGILQQLDYGLIECQALVLAPTRELAQQIEKVMRALGDYLGVKVHACVGGTSVREDQRILSSGVHVVVGTPGRVFDMLRRQSLRPDCIRMFVLDEADEMLSRGFKDQIYDIFQLLPSKIQVGVFSATMPPEALEITRKFMNKPVRILVKRDELTLEGIKQFHVNVEREEWKLDTLCDLYETLAITQSVIFVNTRRKVDWLTDKMRSRDHTVSATHGDMDQNTRDIIMREFRSGSSRVLITTDLLARGIDVQQVSLVINYDLPTQPENYLHRIGRSGRFGRKGVAINFVTKDDERMLFDIQKFYNVIIEELPSNVAELL 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1289 443 Gene3D - 279 443 IPR027417 -
Bisa08g1289 443 FunFam Eukaryotic initiation factor 4A-III 278 443 - -
Bisa08g1289 443 Pfam Helicase conserved C-terminal domain 296 404 IPR001650 -
Bisa08g1289 443 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 101 271 IPR014001 -
Bisa08g1289 443 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 139 424 IPR027417 -
Bisa08g1289 443 SMART helicmild6 323 404 IPR001650 -
Bisa08g1289 443 CDD SF2_C_DEAD 283 413 - -
Bisa08g1289 443 SMART ultradead3 89 286 IPR014001 -
Bisa08g1289 443 PANTHER RNA HELICASE 50 427 - -
Bisa08g1289 443 FunFam Eukaryotic initiation factor 4A-II 58 277 - -
Bisa08g1289 443 Pfam DEAD/DEAH box helicase 95 256 IPR011545 GO:0003676|GO:0005524
Bisa08g1289 443 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 282 443 IPR001650 -
Bisa08g1289 443 ProSiteProfiles DEAD-box RNA helicase Q motif profile. 70 98 IPR014014 GO:0003724
Bisa08g1289 443 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 217 225 IPR000629 -
Bisa08g1289 443 CDD DEADc_EIF4A 75 272 - -
Bisa08g1289 443 Gene3D - 60 278 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1289 Bisa-ChrBisa08 26334243 26337406 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1289 31 443 Eukaryotic Initiation Factors Gene Family AT1G72730 87.681 0.0 763