Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1280 ATGGACAGCGTCTTCTCCTTCCCAGAAGCTGCGAGACTAAACTTCCTCCACTCTGTGTTGCACTCTTTTGGGTGCGCCTACATTTGCCTCTGGTCCTACCCTTCCTCATCCAATCGATTGTTCTTCTTGGATGGTTTCTACAACCAACAAGGCTCTTCTTTAGGGAGTATCGATCAGAGTCTATTTGCCCGATATAGAGGTTTAGAGTTCGATGTCACTACTCATGACCGAGTTCCAGGACTGGCTTTCAGGAACCACTACTCCTATCTAGAGCTGCAACAATCTGATCTACTAAGCCTGGCTTGGACTGATCTTCAAAGACAGTTCTTTCTGGAAGCAAGGATTAAGATGGCTGCTTTCATGGGGTGCAGCAACGGCGAAATTGAGCTTGGCTTCTCAACTTTCTCTCAAGGTGACATCAAGACAGATCTGATGAACTTGTTTCCACAAGAATTGTGCGGACAAATTTCCCATCCAATTGAGCAGAAAAATCCACCATCGTCATCATCTTCATTGAGATCATTATCATTATCCACAGGTAGCCCCGAATACTCAACCCTACTCACTACTATTCCAGCCACCGCTTCCCTCTTTCCGGCAGAGTCGCCCGGAGGAGCTCCGGCTGTAATAATGCAGCCAGAGAGTGAAGAGGACGTGATGGTGAGAGCAATCCTTCAGGTCATATCTTCGCCTTCTTCTAATAATCCCACTCCCACGTCTCACCATCATGTCATATCTTCGCCTTCTTCTAATAGTCCCACTCCCACCTCTCACCATCAGGTCATATCTTCGCCTTCTTCTAATAATCCCACGCCCACCTCTCACCATCATCATAATCATCAGCAGCAAAATTTGCCTTATAGTTCAGTGGTGCATCAAGAAGGAGTTAGTACTAGTGCTTTTAAGAGGTATAGACCAGTCACGTCTTCCAAATCATCCAATTTGCGAAGGGAAAGCTTGTTGAAGCGATCGTTTGAATTGTTTAGAGGCTTAAATTCCATGAGAATGAGGGAACGTTCTAGTACCCAGCTTCTTCATATGATATCAGAGCGAAGAAGGCGTGAGAAACTCAAGGAGAATTTTCAGGCTCTTCGAGCACTACTCCCACCAGGAACCAAGAAAGACAAAGCATCGATACTCACAACAGCGAAGGAGACAGTGAAGTCCTTGATGGCCGAGATTGAAAAAATGAGCAAAAGAAATCAGGACTTAGAAGCACTACAAAATTCAATCAACAAGAAATTACCCATAGATGAAACCAAAAGTGCCTCTTCTAATGAAAGAGTGAGTGTAAGAGTTTCAGACGTAGCAGGGTCTTCGAGCTCCTCAGAAGAAAGAATCATGGAGCTGCATGTGACTACTGCGAGAGCACAAAGTCGTTGTTCTCAGGTTGATATACTGATTCGCCTATTGCAATTCTTAAAAGGCCTTCACAACCTCAGCTTAGTTTCCATGGATGCTAACATTCGCGTAGCAGAAGGAGTTGCCATTGATGAACTCACCTTAAGACTAAAGATTGAGGAAAGTGAATGGGACGAGGCTGCCTTCCAAGAAGCAGTGAGGAGGGTAGTTGCTGACTTGTGTGGCCAATCAGTACCTTCCACGTCAGCAACTCCTTGA 1620 0.4531 MDSVFSFPEAARLNFLHSVLHSFGCAYICLWSYPSSSNRLFFLDGFYNQQGSSLGSIDQSLFARYRGLEFDVTTHDRVPGLAFRNHYSYLELQQSDLLSLAWTDLQRQFFLEARIKMAAFMGCSNGEIELGFSTFSQGDIKTDLMNLFPQELCGQISHPIEQKNPPSSSSSLRSLSLSTGSPEYSTLLTTIPATASLFPAESPGGAPAVIMQPESEEDVMVRAILQVISSPSSNNPTPTSHHHVISSPSSNSPTPTSHHQVISSPSSNNPTPTSHHHHNHQQQNLPYSSVVHQEGVSTSAFKRYRPVTSSKSSNLRRESLLKRSFELFRGLNSMRMRERSSTQLLHMISERRRREKLKENFQALRALLPPGTKKDKASILTTAKETVKSLMAEIEKMSKRNQDLEALQNSINKKLPIDETKSASSNERVSVRVSDVAGSSSSSEERIMELHVTTARAQSRCSQVDILIRLLQFLKGLHNLSLVSMDANIRVAEGVAIDELTLRLKIEESEWDEAAFQEAVRRVVADLCGQSVPSTSATP 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1280 539 SMART finulus 347 396 IPR011598 GO:0046983
Bisa08g1280 539 CDD bHLH_AtbHLH_like 346 398 IPR045239 -
Bisa08g1280 539 MobiDBLite consensus disorder prediction 158 177 - -
Bisa08g1280 539 Pfam Helix-loop-helix DNA-binding domain 346 390 IPR011598 GO:0046983
Bisa08g1280 539 MobiDBLite consensus disorder prediction 230 283 - -
Bisa08g1280 539 Coils Coil 347 367 - -
Bisa08g1280 539 Coils Coil 380 414 - -
Bisa08g1280 539 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 341 390 IPR011598 GO:0046983
Bisa08g1280 539 MobiDBLite consensus disorder prediction 160 177 - -
Bisa08g1280 539 Gene3D - 342 416 IPR036638 GO:0046983
Bisa08g1280 539 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 341 406 IPR036638 GO:0046983
Bisa08g1280 539 PANTHER TRANSCRIPTION FACTOR BHLH041-RELATED-RELATED 104 526 IPR044658 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1280 Bisa-ChrBisa08 26108080 26113969 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1280 1 528 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G56960 35.702 5.82e-73 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Bisa08g1280 HLH 4.1e-09 No_clan