Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1238 ATGGAACGCTACGACAATGATCGTCTTGGTTTTGGGAAGATGGGATACGGGTGCAAGCATTATAGGAGAAGATGCAAGATTCGGGCTCCCTGCTGCAACGAGATATACTCCTGCCGTCACTGTCATAACGAAGCAACGAGCATGTTGAGGAATCCCTTTGATCGGCACGAGCTCGTCCGCGAAGATGTTAAACAAGTTGTTTGTTCAGTTTGTGATACAGAGCAACCGGTTTCTCAAGTTTGCACAAACTGTGGCGTCAAAATGGGAGAATATTTCTGCGACATCTGCAAATTCTTCGATGATGATACAGAGAAACAGCAGTTTCATTGTGATGATTGTGGGATCTGCAGAATTGGTGGTCGTGATAACTTTTTCCACTGCGATAAATGCGGGTCTTGCTATTCTCTTGGTCTACTTGATAATCATTTATGTGTGGAGGACTCAATGAGACACCACTGTCCTATCTGTTATGAGTACCTTTTTGACTCAGTGAAAGATACTACCGTCATGAAATGTGGTCACACAATGCATTGTGAATGTTTCCACGAGATGATAAAGCGTGACAAGTACTGTTGCCCCATATGCTCAAAGTCAGTGATCGACATGTCTAGCATCTGGAAGATGATTGACGATGAGATTGAAGCAACTCTCATGCCTGATGATTATCGGTACAAGAAGGTTTGGATACTATGTAATGACTGCAATGACACAACTGAAGTTTACTTCAACATTATTGGGCATAAATGTGGCCACTGCAGCTCATATAATACTCGTGAAATCGCTCCTCCAGTTCTTCCTCAATGA 804 0.4303 MERYDNDRLGFGKMGYGCKHYRRRCKIRAPCCNEIYSCRHCHNEATSMLRNPFDRHELVREDVKQVVCSVCDTEQPVSQVCTNCGVKMGEYFCDICKFFDDDTEKQQFHCDDCGICRIGGRDNFFHCDKCGSCYSLGLLDNHLCVEDSMRHHCPICYEYLFDSVKDTTVMKCGHTMHCECFHEMIKRDKYCCPICSKSVIDMSSIWKMIDDEIEATLMPDDYRYKKVWILCNDCNDTTEVYFNIIGHKCGHCSSYNTREIAPPVLPQ 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1238 267 Pfam CHY zinc finger 18 98 IPR008913 GO:0008270
Bisa08g1238 267 SMART ring_2 153 195 IPR001841 -
Bisa08g1238 267 ProSiteProfiles Zinc finger RING-type profile. 153 196 IPR001841 -
Bisa08g1238 267 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 141 225 IPR013083 -
Bisa08g1238 267 PANTHER RING FINGER AND CHY ZINC FINGER DOMAIN-CONTAINING PROTEIN 1 13 264 - -
Bisa08g1238 267 SUPERFAMILY RING/U-box 152 203 - -
Bisa08g1238 267 Pfam Zinc-ribbon 200 258 IPR039512 -
Bisa08g1238 267 SUPERFAMILY CHY zinc finger-like 16 87 IPR037274 GO:0008270
Bisa08g1238 267 ProSiteProfiles Zinc finger CHY-type profile. 11 86 IPR008913 GO:0008270
Bisa08g1238 267 ProSiteProfiles Zinc finger CTCHY-type profile. 88 152 IPR017921 -
Bisa08g1238 267 Pfam Zinc finger, C3HC4 type (RING finger) 153 195 IPR018957 GO:0046872
Bisa08g1238 267 SUPERFAMILY Zinc hairpin stack 89 146 IPR037275 -
Bisa08g1238 267 Gene3D - 226 262 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1238 Bisa-ChrBisa08 24933119 24937606 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1238 13 266 C2H2 Transcription Factor Family AT3G18290 40.385 1.69e-55 190
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1238 08 24933119 24937606 Bisa08g1238 08 24933119 24937606 ECH