Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1233 ATGGAGCGGTACGGCCGGGCTAGTGACGTGTCGCAGTCTGATCCGCCACCGGAATGGACCGGAACCGGAGGCGAAACGGGGCTTGAAGGAGCTGTGTGGCAATTGGGATTGGGCGGTGGGGAATTGTACCCGCAACGGCCCGAAGAGGCTAATTGTATCTACTATTTGAAGACAGGGTTTTGTGGGTATGGCTCGCGGTGTCGGTTCAATCATCCCCATGACCGTGGCGGGGTTATTGGAGCTGCAAGGACTGCAGGGGAGTATCCAGAGCGAGTAGGCCAGCCTGTATGCCAGTATTATATGAAGACAGGATCTTGCAAATTTGGTGCTTCATGTAAGTACCACCATCCTAGGCAGGGAGAAAGCACTGCTCCCCCCATGACACTTAATTATTATGGATATCCATTGCGACCGGGTGAGAAAGAATGTTCCTATTATGTGAAAACAGGAGAATGCAAGTTTGGCTCAACTTGTAAATTCCATCACCCTCAGCCTGCTGGTGTTCAAGTTCCTGCACCCTCACCAGTTCCCCCAGTTTCACCTCTACCCGTACGTGTACCTTCACCGTTATATCCAACTGTACAGACTCCATCTGGTACTTTATCACAACAATACGGTGTCATGGTTGCAAGGCCACCTCTACTACCTGGTTCATTAGTCCAAAGTCCTTATGGGCCTATGGTAGTGTCCCCTGTCCCTTTTTCAGGCTGGAATCCTTATCAGGCTCCTGCAAGCCCTGTAGTTCCCTCTAGTACTGTGTCTAATGTTGTTTCAATGCAGCTTTATGGGATAACCCAGGTATCTTCAAATGCACCTGCCTATACTGCACCTTATCAACCTACAAGTTCCTCAGTTGGTCCTTCAGGCACTAGTCAGAAGGAGCACTTGTTGCCAGAAAAGCCTGGTCAACCAGAATGTCAGCATTACATGAAAACGGGGGAGTGTAGATTTGGTCCTTCTTGTAGATATCATCATCCGCCTGAATTAATTGCATCAAAAATGAATGTGGTCCTTAGTCCTGTGGGTCTTCCTTTGCGTCCGGGGGCACCACCTTGCACTCATTATGCACAGCGTGGAGTATGCAAGTTTGGTCCTGCTTGCAAATTTGATCATCCTACGGGAGCACTGAACTATAGTCCATCTGCTTCTTCACTCACTGACATGCCAGTTGCACCCTATCCTGTGGGTTCATCAATTGGTACTCTTGCTCCACCATCCTCATCATCGGAGTTGCAGCCTGAACTTACTTCGGGATCCAGCAAGGACGCTGGATCATCCAGTGTGTCTTCATCAATGATCACATCCACTGCATCAGTTGGCTTGACTTTGTCAACTGGTGGAATAATTTCTCAATCAAGCGCCCAACCGTCCACCCAGAGTTCTGCTCCACTAGCAGCCACTGCTAGCACCACAAGCAGCACCGTCTCTCCTACCTCCAGCTAA 1443 0.4969 MERYGRASDVSQSDPPPEWTGTGGETGLEGAVWQLGLGGGELYPQRPEEANCIYYLKTGFCGYGSRCRFNHPHDRGGVIGAARTAGEYPERVGQPVCQYYMKTGSCKFGASCKYHHPRQGESTAPPMTLNYYGYPLRPGEKECSYYVKTGECKFGSTCKFHHPQPAGVQVPAPSPVPPVSPLPVRVPSPLYPTVQTPSGTLSQQYGVMVARPPLLPGSLVQSPYGPMVVSPVPFSGWNPYQAPASPVVPSSTVSNVVSMQLYGITQVSSNAPAYTAPYQPTSSSVGPSGTSQKEHLLPEKPGQPECQHYMKTGECRFGPSCRYHHPPELIASKMNVVLSPVGLPLRPGAPPCTHYAQRGVCKFGPACKFDHPTGALNYSPSASSLTDMPVAPYPVGSSIGTLAPPSSSSELQPELTSGSSKDAGSSSVSSSMITSTASVGLTLSTGGIISQSSAQPSTQSSAPLAATASTTSSTVSPTSS 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1233 480 SUPERFAMILY CCCH zinc finger 94 119 IPR036855 GO:0046872
Bisa08g1233 480 ProSiteProfiles Zinc finger C3H1-type profile. 346 374 IPR000571 GO:0046872
Bisa08g1233 480 MobiDBLite consensus disorder prediction 401 431 - -
Bisa08g1233 480 ProSiteProfiles Zinc finger C3H1-type profile. 300 328 IPR000571 GO:0046872
Bisa08g1233 480 MobiDBLite consensus disorder prediction 278 297 - -
Bisa08g1233 480 PANTHER PROTEIN PHOSPHATASE RELATED 39 406 - -
Bisa08g1233 480 SUPERFAMILY CCCH zinc finger 46 74 IPR036855 GO:0046872
Bisa08g1233 480 ProSiteProfiles Zinc finger C3H1-type profile. 137 165 IPR000571 GO:0046872
Bisa08g1233 480 Gene3D - 122 172 - -
Bisa08g1233 480 SUPERFAMILY CCCH zinc finger 304 327 IPR036855 GO:0046872
Bisa08g1233 480 SUPERFAMILY CCCH zinc finger 139 165 IPR036855 GO:0046872
Bisa08g1233 480 Gene3D - 289 377 - -
Bisa08g1233 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 48 72 IPR000571 GO:0046872
Bisa08g1233 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 349 372 IPR000571 GO:0046872
Bisa08g1233 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 302 327 IPR000571 GO:0046872
Bisa08g1233 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 94 118 IPR000571 GO:0046872
Bisa08g1233 480 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 139 164 IPR000571 GO:0046872
Bisa08g1233 480 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Bisa08g1233 480 SMART c3hfinal6 137 164 IPR000571 GO:0046872
Bisa08g1233 480 SMART c3hfinal6 300 327 IPR000571 GO:0046872
Bisa08g1233 480 SMART c3hfinal6 91 118 IPR000571 GO:0046872
Bisa08g1233 480 SMART c3hfinal6 346 373 IPR000571 GO:0046872
Bisa08g1233 480 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Bisa08g1233 480 MobiDBLite consensus disorder prediction 448 480 - -
Bisa08g1233 480 Gene3D - 44 121 - -
Bisa08g1233 480 MobiDBLite consensus disorder prediction 1 25 - -
Bisa08g1233 480 SUPERFAMILY CCCH zinc finger 350 377 IPR036855 GO:0046872
Bisa08g1233 480 ProSiteProfiles Zinc finger C3H1-type profile. 91 119 IPR000571 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1233 Bisa-ChrBisa08 24857448 24863699 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1233 1 439 C2H2 Transcription Factor Family AT5G18550 56.399 6.40e-154 444
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Bisa08g1233 zf-CCCH 5.2e-08 CL0537