Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1200 ATGGGTGACACTCTAATTCGAGGTCGAATGTTCAGTCCGAGCATGGATTCTGCGAGGGACACGGGTGGTGTTGCGGGGACGGTGTTAATCCCGACGCGGTTTGTGTGGCCGTATGGGGGAAGAAGTGTGTATCTCAGTGGTTCTTTCGCACGGCAAGAGGGACACGGGGGGTGGTCTCAGCTTCTACCAATGTCGCCAGTGGAGGGTTGCCCTACTGTATTTCAAGTTATTTATAGCTTGACCCCTGGTTTTCATCAGTACAAATTTTTTGTTGACGGAGAATGGCGACATGATGAGCGTCAACCTTGTGTATCTGGAGATTATGGGATAGTTAACACTGTCCTGTTGGCTGCTGATCCTAATTACATGCCTGTTGCAACTCCAGACACTTCTAGATCTAACATGGATGTGGATAGTGAGGCTTTTCGGCGGGTGGTCCGGTTGACAGATGGTATATTGACAGATGGTACATTGACGGACCTATTGCCGAGAATATCTGATGCTGATGTACAGATTTCCCGGCAGCGTATCACTGCATTCTTGTCTGTGCACACAGCTTATGAATTACTTCCTGAGTCAGGCAAGGTTGTTGCTTTGGATGTTCATCTGCCAGTGAAACAGGCATTTCATGTTTTATATGAGCAGGGAATCCCTATGGCTCCTCTTTGGGACCTTAGCAAAGGGCAGTTTGTTGGCATTGTCAGTGCTTTGGATTTTATTTTAATTTTAAGAGAGCTTGGGAATCATGCGTCCAATCTGACAGAAGAGGAGCTAGAAACACATACCATATGTGCTTGGAAGGAAGGAAAATCATATCTTAATAGACAAAACAATGGACCTGGATCAGCATTTCCAAGACGTTTTGTTAATGCTGGGCCATATGATAATTTAAAAGATATTGCCTTGAAGATCCTGCAGAAAGAAGTTTCAACTGTTCCCATTATCCATTCATCTTCTGAAGATGGTTCATTTCCACAGCTATTACATCTTGCTTCACTTTCTGGAATACTTAAATGCATTTGCAGGTATTTTAGGAATTGTACCAATACATTGCCTGTACTCCAACTACCCATTTGTGTGATTCCTGTGGGTACATGGGTGCCCAAAATTGGGGAGTCAAATCGGCGGCCTTTGGCAATGTTGAGACCAAATAATTCTCTCGCTTCAGCCCTAAATTTATTAGTCCAAGCTCAAGTAAGTTCAATACCAATAGTTGATGATAATGACTCATTATTGGATATATATTGCCGGAGTGATATAACAGCTTTGGCAAAGGACAGAGCTTATACACATATTAATCTTGATGAAATGACTGTTCATCAGGCCTTGCAATTGGGCCAGGATTCGTATCAGCCTTATGAACTGAGAAGTCAAAGATGTCAGATGTGTTTGCGATCTGATTCTCTGCATAAAGTGATGGAACGACTGTCTCATCCAGGGGTCAGGCGGCTTGTTATTGTGGAAGCTGGCAGTAAGCGTGTAGAAGGCATTGTTTCACTGACTGACATATTCAAGTTCTTCCTCGGGTAG 1530 0.4379 MGDTLIRGRMFSPSMDSARDTGGVAGTVLIPTRFVWPYGGRSVYLSGSFARQEGHGGWSQLLPMSPVEGCPTVFQVIYSLTPGFHQYKFFVDGEWRHDERQPCVSGDYGIVNTVLLAADPNYMPVATPDTSRSNMDVDSEAFRRVVRLTDGILTDGTLTDLLPRISDADVQISRQRITAFLSVHTAYELLPESGKVVALDVHLPVKQAFHVLYEQGIPMAPLWDLSKGQFVGIVSALDFILILRELGNHASNLTEEELETHTICAWKEGKSYLNRQNNGPGSAFPRRFVNAGPYDNLKDIALKILQKEVSTVPIIHSSSEDGSFPQLLHLASLSGILKCICRYFRNCTNTLPVLQLPICVIPVGTWVPKIGESNRRPLAMLRPNNSLASALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDRAYTHINLDEMTVHQALQLGQDSYQPYELRSQRCQMCLRSDSLHKVMERLSHPGVRRLVIVEAGSKRVEGIVSLTDIFKFFLG 509
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1200 509 ProSiteProfiles CBS domain profile. 455 509 IPR000644 -
Bisa08g1200 509 FunFam Sucrose nonfermenting 4-like protein 27 117 - -
Bisa08g1200 509 SMART cbs_1 377 425 IPR000644 -
Bisa08g1200 509 SMART cbs_1 459 508 IPR000644 -
Bisa08g1200 509 SMART cbs_1 195 244 IPR000644 -
Bisa08g1200 509 ProSiteProfiles CBS domain profile. 189 251 IPR000644 -
Bisa08g1200 509 ProSiteProfiles CBS domain profile. 373 430 IPR000644 -
Bisa08g1200 509 Pfam Glycogen recognition site of AMP-activated protein kinase 30 117 IPR032640 -
Bisa08g1200 509 Gene3D - 166 349 IPR046342 -
Bisa08g1200 509 SUPERFAMILY E set domains 30 117 IPR014756 -
Bisa08g1200 509 SUPERFAMILY CBS-domain pair 373 508 IPR046342 -
Bisa08g1200 509 Gene3D - 361 509 IPR046342 -
Bisa08g1200 509 PANTHER AMP-ACTIVATED PROTEIN KINASE, GAMMA REGULATORY SUBUNIT 169 507 - -
Bisa08g1200 509 Gene3D Immunoglobulins 30 126 IPR013783 -
Bisa08g1200 509 SUPERFAMILY CBS-domain pair 176 346 IPR046342 -
Bisa08g1200 509 CDD E_set_AMPKbeta_like_N 31 115 - -
Bisa08g1200 509 Pfam CBS domain 462 508 IPR000644 -
Bisa08g1200 509 Pfam CBS domain 375 421 IPR000644 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1200 Bisa-ChrBisa08 22571998 22580693 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1200 20 119 Protein tyrosine phosphatase (PTP) family AT3G01510 29.703 2.50e-06 48.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1200 08 22571998 22580693 Bisa08g1200 08 22571998 22580693 ECH