Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1138 ATGGGGTCCAATGAAGATCGCAATTACAATCTGTACCACGAGAAGTCCTCTGACCTCACCGGCAAAATCATGCTCGCCACCGTCGTCATTCTCTTCTTTGTCGTCATTGTCTTGATCTTCCTCCACCTCTACGCCCGCTGGTACCTCCGCCGCGCTCGCCGCCGTCTCCGCCACCGCCGCCGCGCCCATCTCGTCATCTACGTCGACCCCATCGCCTCCGAAGTCTCCTCGCGTGGCCTCGATCCCTCAGTGGTTCAGTCTCTACCTGTATTCGTATATTCCTCCGAGACTCGCCCCCACTCCGACCCCGTGGAATGCGCCGTCTGCTTGTCGGAGTTCGAAGAGAACGAATCGGGTCGGATCTTGCCCAAATGCAACCACACCTTTCACGCCGAGTGCATTGACGTCTGGTTCCAATCCCACTCCACTTGCCCGCTTTGCAGATCCATGGTCGAACCCGCACTGACCGTCGACCGAACCGGACCCGAAGTGGTTATCGATATCTGTGAACCGGCGGGACCTGAACCAGCTTCCGCCACCGGGTTGACCGCAGGGTGTGGGGACGAAGAGAACCGAACCGGCCCGACACTTTCTTCATCGTTGTCTTCAATTGGATTGAGGCGGAAGCCGTCGTCGCTGGCGGGTGTGGCTGTTGAGATGTCGGCGAGCAGGAGCTTCGGGAAGGAGGGGGAGGCGTCGGGGTGTGGGTCACCGTCGTCGTTTAGATCGCCGAAGAGTCGCATGCTGTCGTTTAAGAGAATTCTGAGCAGAGAGAGAAAAGCAAGCCTTTCTCCATCGTCGGAGAGTGGGGTAGAAGGATGCAGCACCGTAGCCATAACTGAGTTAGACAGGGAACGAGTCGGCCGAGACGAGTCATAG 879 0.5825 MGSNEDRNYNLYHEKSSDLTGKIMLATVVILFFVVIVLIFLHLYARWYLRRARRRLRHRRRAHLVIYVDPIASEVSSRGLDPSVVQSLPVFVYSSETRPHSDPVECAVCLSEFEENESGRILPKCNHTFHAECIDVWFQSHSTCPLCRSMVEPALTVDRTGPEVVIDICEPAGPEPASATGLTAGCGDEENRTGPTLSSSLSSIGLRRKPSSLAGVAVEMSASRSFGKEGEASGCGSPSSFRSPKSRMLSFKRILSRERKASLSPSSESGVEGCSTVAITELDRERVGRDES 292
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1138 292 ProSiteProfiles Zinc finger RING-type profile. 106 148 IPR001841 -
Bisa08g1138 292 SMART ring_2 106 147 IPR001841 -
Bisa08g1138 292 FunFam RING-H2 finger protein ATL3 72 153 - -
Bisa08g1138 292 MobiDBLite consensus disorder prediction 258 277 - -
Bisa08g1138 292 MobiDBLite consensus disorder prediction 260 274 - -
Bisa08g1138 292 CDD RING-H2_EL5-like 105 148 - -
Bisa08g1138 292 Pfam Ring finger domain 105 148 IPR001841 -
Bisa08g1138 292 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 25 156 - -
Bisa08g1138 292 MobiDBLite consensus disorder prediction 183 204 - -
Bisa08g1138 292 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 68 154 IPR013083 -
Bisa08g1138 292 MobiDBLite consensus disorder prediction 227 247 - -
Bisa08g1138 292 SUPERFAMILY RING/U-box 85 154 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1138 Bisa-ChrBisa08 21264013 21264891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1138 5 290 Rapid Response to Elicitors AT3G16720 48.860 5.11e-70 217
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g1138 08 21264013 21264891 Bisa08g1138 08 21264013 21264891 ECH