Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1075 ATGAATCTGAGCAACGCCAAGGGATCCATGTCAACGGTTAGTTCCAGTGCTGCTTGGAAATCCGGCGGAGACGGCGCCGGCGATCAGTTCCCGGTGGGGCTCCGGGTGCTGGTGGTGGATGATGATCCCACGTGTCTCATGATCCTCGAGAGGATGCTTCGCACTTGCCTCTACGAAGTTACGAAATGCAATCGAGCCGAAGTTGCATTGTCGATTCTGAGAGAGAACAAAACTGGGTTTGACATAGTTATAAGTGATGTGCATATGCCAGACATGGATGGTTTTAAGCTTTTAGAACACATTGGGTTGGAGATGGACCTTCCAGTTATAATGATGTCAGCAGATGATGGAAAGAATGTTGTTATGAAAGGTGTGACACACGGTGCTTGCGATTACCTGATAAAACCAGTGCGTATCGAGGCTCTGAGGAATATATGGCAGCATGTGGTTCGGAAGAGGAAGAATGAGTGGAAGGATCTGGAGCAATCCTGTAGTGCAGAAGAAGGAGATAGGCAGCAAAAGCCATCTGATGAAGCTGAGAACTCATCCTCTGCAAATGAAGGAAATTGGAGAAGTGCTAAGAAGAAGAGGGACGAGGAGGAAGAAGCCGAGGAGAAGGATGATACATCCACGTTAAAGAAGCCGCGAGTTGTTTGGTCTGTTGAGCTCCATCAACAGTTTGTGGTAGCTGTGAATCAACTCGGAATCGACAAGGCTGTACCTAAGAAAATTCTGGAATTGATGAATGTTCCTGGACTCACAAGAGAAAATGTTGCTAGCCATCTCCAGAAATACCGATTGTATCTTCGAAGGCTTAGTGGAGTTTCTCAGCACCAGAGTAACATGAACAACTCTTTCATCAGCCAACAAGAAGCAAACTTTGGGACAATGTCAGCATTTAATGGCATTGATCTTCAAACTCTTGCAGCTGCTGGCCAGATTCCGGCACAGAGTCTAGCAACACTTCAAGCAGCGGGACATGGTAGATCGGCTGCTAAAGCTGGTGTATCTGTGTCCCTTGTTGATGAAAGGAACCTATTCAGTTTTGAGAACCCGAGATTAAGATTTGGAGAAGGACAACAGCAACACTTGAGCAGTACTAAACCGATGAACTTACTTCACGGAATCCCTACTAACATGGAGCCAAAACAACTTGCCACTTTGCACCAATCTGCACAGTCCCTTAGCAGCTTGAATGCTCGAGTCAATGCTTCTGTTGCACAGAGCAGCCCCTTGTTGATGCCGATGGCTCAATCCCAACCAAGAGGTCAGATGCTAAGTGAAAGTACCGGCTCTCATCTTCCCAGACTTCCATCATCTATGGGGCAGCCTACTGTATCAAATGGTGCTCTGGGCAGAAATGGGACTGCTGGTGGTAACCGAGGAGCTTCATATAATCCAATTCCTCAAACTTCTTCGTTGCCTAGTTTTCCCATGAACCAAACTGCAGAAATGTCTGCTGGTAGTTTCCCACTTGCAAGCACACCGGCCATATCGAGTATAACTACGAAAGGCACATTTCAAGAGGAAGTTACTTCAGGAATCAAAGGAACTGGAGGATTTGTTCAAAATTATGATATTTTCAACGAACTCCATCAGCAGAAGTCCCATGATTGGGTACAAAATTTGGGAGGCCTCACATACAATAATTCTCAGCATGCAAATCCTTTACAAGGTAACATTGATGTCTCACCCTCAGTCATAGTCCAACAGGGCTTTTCTTCTACACAACAGACTGGACAGAATAGAGATCCTACTCTGATCGGAAAAGCAATGTACTCCCTAGGGAAAGGCTTGGAGCAAGGAAATATCCAAAACATCGGTCAAAACCTCCATCCGGTTGTTGAAAATTCTGCAAGGGTTAAGACTGAAAGCATTCCTGATGCAAACTCGCAATCTAACTTCTTCCCCGAGCATTATGAGCAGGATGATCTTATGAGTGCACTTCTAAAACAGCAAGAAGGCATTGGAGGAGCAGAGAATGAATTTGAGTTTGATGGATATTCCTTGGATAACATTCCAGTGTAG 2028 0.4551 MNLSNAKGSMSTVSSSAAWKSGGDGAGDQFPVGLRVLVVDDDPTCLMILERMLRTCLYEVTKCNRAEVALSILRENKTGFDIVISDVHMPDMDGFKLLEHIGLEMDLPVIMMSADDGKNVVMKGVTHGACDYLIKPVRIEALRNIWQHVVRKRKNEWKDLEQSCSAEEGDRQQKPSDEAENSSSANEGNWRSAKKKRDEEEEAEEKDDTSTLKKPRVVWSVELHQQFVVAVNQLGIDKAVPKKILELMNVPGLTRENVASHLQKYRLYLRRLSGVSQHQSNMNNSFISQQEANFGTMSAFNGIDLQTLAAAGQIPAQSLATLQAAGHGRSAAKAGVSVSLVDERNLFSFENPRLRFGEGQQQHLSSTKPMNLLHGIPTNMEPKQLATLHQSAQSLSSLNARVNASVAQSSPLLMPMAQSQPRGQMLSESTGSHLPRLPSSMGQPTVSNGALGRNGTAGGNRGASYNPIPQTSSLPSFPMNQTAEMSAGSFPLASTPAISSITTKGTFQEEVTSGIKGTGGFVQNYDIFNELHQQKSHDWVQNLGGLTYNNSQHANPLQGNIDVSPSVIVQQGFSSTQQTGQNRDPTLIGKAMYSLGKGLEQGNIQNIGQNLHPVVENSARVKTESIPDANSQSNFFPEHYEQDDLMSALLKQQEGIGGAENEFEFDGYSLDNIPV 675
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1075 675 SMART REC_2 34 146 IPR001789 GO:0000160
Bisa08g1075 675 CDD REC_typeB_ARR-like 36 150 - -
Bisa08g1075 675 MobiDBLite consensus disorder prediction 190 211 - -
Bisa08g1075 675 Pfam Myb-like DNA-binding domain 216 266 IPR001005 -
Bisa08g1075 675 SUPERFAMILY CheY-like 33 156 IPR011006 -
Bisa08g1075 675 MobiDBLite consensus disorder prediction 161 211 - -
Bisa08g1075 675 SUPERFAMILY Homeodomain-like 211 271 IPR009057 -
Bisa08g1075 675 MobiDBLite consensus disorder prediction 161 177 - -
Bisa08g1075 675 ProSiteProfiles Response regulatory domain profile. 35 150 IPR001789 GO:0000160
Bisa08g1075 675 FunFam Two-component response regulator 34 171 - -
Bisa08g1075 675 Pfam Response regulator receiver domain 36 144 IPR001789 GO:0000160
Bisa08g1075 675 PIRSF RR_ARR_type-B 11 667 IPR017053 GO:0003677|GO:0003700|GO:0009736
Bisa08g1075 675 Gene3D - 34 171 - -
Bisa08g1075 675 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 213 270 IPR017930 -
Bisa08g1075 675 Gene3D - 211 273 - -
Bisa08g1075 675 FunFam Two-component response regulator 210 273 - -
Bisa08g1075 675 PANTHER TWO-COMPONENT RESPONSE REGULATOR 34 372 IPR045279 GO:0009736
Bisa08g1075 675 NCBIfam myb-like DNA-binding domain, SHAQKYF class 214 267 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1075 Bisa-ChrBisa08 19621973 19625228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1075 68 675 Response Regulator Gene Family AT3G16857 49.695 3.96e-178 519
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Bisa08g1075 Response_reg 9e-23 CL0304