Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g1067 ATGTCGCTCAGGCCGAATGCTAGAACCGAGGTCCGCCGCAACCGCTACAAGGTGGCGGTGGACGCTGATGAGGGCCGCCGAAGAAGAGAAGACAACATGGTGGAGATCCGAAAGAGCAAGCGCGAAGAGAGCTTGCAGAAAAAGCGTCGCGAAGGCCTACAAGCACAGCAACAATTCGCCACTCCTATTCAGTCTTCCACTGTCGAGAAAAAGTTGGAGAGTCTTCCTTCGATGGTTGCTGGGGTTTGGTCCGATGACAGTAGCCTGCAGCTAGAAGCGACTACACAATTCCGGAAGCTGCTTTCTATTGAGCGTAGCCCTCCTATTGAGGAAGTTATTCAATCTGGTGTTGTCCCACGATTTGTTGAGTTTCTCGTTAGGGAAGATTTTCCTCAACTTCAGTTTGAGGCTGCATGGGCGCTTACAAACATAGCATCTGGGACTTCTGAGAACACCAAGGTGGTAATTGATCATGGGGCTGTCCCAATATTTGTTAAGCTTCTTAGTTCTCCAAGTGATGATGTTCGGGAGCAGGCGGTGTGGGCACTGGGAAATGTTGCTGGTGACTCCCCAAGGTGCCGTGATCTTGTTCTCAACCATGGTGCCCTGATCCCACTATTGGCTCAGTTGAATGAGCATGCAAAACTTTCAATGTTGAGAAATGCCACATGGACACTATCCAACTTCTGCAGGGGCAAGCCACAGCCCCCATTTGAGCAGGTGAGGCCAGCACTTCCAGCCCTGGAGCGTTTGGTTTTTTCGAATGATGAAGAAGTCCTGACTGACGCGTGCTGGGCACTATCATATCTTTCTGATGGAACAAATGACAAAATCCAAGCAGTTATTGAGGCTGGTGTGTGTGGCCGATTAGTGCAGCTCCTGCTGCATCCATCTCCTTCAGTGCTGATTCCTGCTCTTCGCACGGTGGGAAATATTGTGACTGGAGATGATATTCAGACTCAATGTATTATAAATCATGGTGCACTACCATGCCTTTTGAGCCTGTTGACGCATAATCATAAGAAAAGCATCAAGAAAGAAGCCTGCTGGACTATATCAAACATTACAGCTGGAAACAGAGAACAGATACAGGCTGTTATTGAAGCTGGTCTGATCGCTCCCCTTGTGAATCTCCTCCAAAATGCTGAGTTTGATATTAAGAAAGAAGCTGCATGGGCAATCTCAAATGCTACTTCTGGTGGTACCCATGAGCAGATCAAGTACTTGCTGAAAAGTGCCTGGGTAACACTGGAGATGTCAACTTGTATGCACAGATGA 1278 0.482 MSLRPNARTEVRRNRYKVAVDADEGRRRREDNMVEIRKSKREESLQKKRREGLQAQQQFATPIQSSTVEKKLESLPSMVAGVWSDDSSLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVEFLVREDFPQLQFEAAWALTNIASGTSENTKVVIDHGAVPIFVKLLSSPSDDVREQAVWALGNVAGDSPRCRDLVLNHGALIPLLAQLNEHAKLSMLRNATWTLSNFCRGKPQPPFEQVRPALPALERLVFSNDEEVLTDACWALSYLSDGTNDKIQAVIEAGVCGRLVQLLLHPSPSVLIPALRTVGNIVTGDDIQTQCIINHGALPCLLSLLTHNHKKSIKKEACWTISNITAGNREQIQAVIEAGLIAPLVNLLQNAEFDIKKEAAWAISNATSGGTHEQIKYLLKSAWVTLEMSTCMHR 425
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g1067 425 SUPERFAMILY ARM repeat 6 411 IPR016024 -
Bisa08g1067 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 159 201 IPR000225 GO:0005515
Bisa08g1067 425 FunFam Importin subunit alpha 11 50 - -
Bisa08g1067 425 PANTHER IMPORTIN ALPHA 12 412 - -
Bisa08g1067 425 MobiDBLite consensus disorder prediction 38 60 - -
Bisa08g1067 425 Gene3D - 73 420 IPR011989 -
Bisa08g1067 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 370 398 IPR000225 GO:0005515
Bisa08g1067 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 327 370 IPR000225 GO:0005515
Bisa08g1067 425 Gene3D - 11 50 IPR036975 GO:0006606
Bisa08g1067 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 116 159 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 148 188 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 233 272 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 359 399 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 105 146 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 189 231 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 316 357 IPR000225 GO:0005515
Bisa08g1067 425 SMART arm_5 274 314 IPR000225 GO:0005515
Bisa08g1067 425 ProSiteProfiles IBB domain profile. 1 58 IPR002652 GO:0006606|GO:0061608
Bisa08g1067 425 FunFam Importin subunit alpha 70 421 - -
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 106 146 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 190 231 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 275 313 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 244 271 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 148 187 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 359 398 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Armadillo/beta-catenin-like repeat 319 357 IPR000225 GO:0005515
Bisa08g1067 425 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 243 285 IPR000225 GO:0005515
Bisa08g1067 425 Pfam Importin beta binding domain 12 95 IPR002652 GO:0006606|GO:0061608
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g1067 Bisa-ChrBisa08 19556597 19560500 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g1067 131 391 U-box Gene Family AT3G46510 25.188 1.07e-10 61.6