Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0978 ATGGGAGTTTCTGAAATGGTTTGGATTGTCATATATCAGTTTCAATTTAATAAATTGCATGAGTCTGAAGTGTGGGTTTGGTATATGGTTGGATCTGCTGCTGGCCAGTCCGCATTTTTCAATATATATTGGGTTGCAATTGGTTGTTGTTTCATTAAGTATGCTACTTCAGAAGAAGCTGATCAGGCAATTAGAGCATTGCACAATCAACATACCCTTCCTGGAGGTGTAGGTCCCATCCAAGTGAGGTATGCTGATGGTGAACGGGAGCGCCTAGGTGCAGTTGAGTACAAATTATTTGTGGGCTCTCTGAACAAACAGGCTACAGTAGATGAAGTTGAGGAAATTTTCTCAAAATATGGACGAGTTGAAGATGTTTATCTTATGCGTGATGAGATGAAGCAAAGCCGTGGATGTGGTTTTGTTAAATATGCCCACAGAGATATGGCACTGGCAGCTATAAATGCACTTAATGGAATATATACAATGAGAGGTTGTGATCAACCTTTAACTGTCCGGTTTGCTGATCCTAAGAGACCTCGGCAAGGGGACTCAAGGGGTCCTGCTTTTCCTCGTCCAGGATTTGGTCCTAGATTTGAAGCACCAGCTCCCTGTCCTCCATCTAATGTTAATGATCCTATGGGTGATCGTATCCCTCCCCCTAATGCTTGGCGTCCGATGCATCGACCAAATATTGGACCATCCTCTAATGCTGGTCCTCATGGTATGGGCCCTCCATTGCTTCCCAGATCTGGTGGCCCAGCAATGCCTATGAATACAGGTGGTCCTATGAGTGGCTTTGGAGGTCCCTTGGATGGTCCTTTTCAAGGACAGTCGTTGTCATCAATGTCACAACAGAATTTCAACCAGCCAATCCCGCAAATTCCACCAATTGGCCAGCAAATGTCACCAATGCATAAATCTATGCAGTCACCTCTGGACTTGCCACCTTCTGCCCAGCTGTACCCTCCAGCCTCAATGCCCTACATACAAACATCAATGTCCCTTTCGTCAGCTACACAAGTTGGCCAGTCACAGCTTCATTTTTCTCGGGGTACTCTTCCGTCACAACAGGTACCTGGCATAAATGGACAGTTACCTGCTTCCCAGCGTCAAGGTCAACAGAATGCTTTGTCTGCTCCTATGCTTCAGAGCCCTCTTGATTCCAGCTTGCAATCTAATGCAGCATTAAATACTGCAAATCAACAGCGACTTCCTGCCTCTGTGCAGCAGCAGCAGCCACTTCAGCCTCTTCAGCAGTCCCCATCCCAGTTGGCTCAGATGTTGTCACAACAAACTCAGACTCTGCAAGCGAGCTTTCATTCATCTCAGCAAGCCTTTTCCCAGCTCCAACAGCAAGTACAGATGATGCAACCATCTAGTCAAGATTTAGCATTGCAGCAAAATGCAGAAGCTGCTATAAAACAGGTAGCGGCCAGCATGCCTGCTTCTGCATCAGCTGCTGATGTGCCTTCATCCACATCTGCAGCCCCTGCTATACCTGCAATAAACCAGAACATGGCTCTTGCAAAGTGCAATTGGACAGAGCATACATCTCCTGAGGGCTTCAAGTATTACTACAATAGTGTCACTTGTGAAAGCCGGTGGGAGAAACCTGAGGAGTTGACATTATTTGAAAGGCAAAAGCAACAGCAAATGCTATCGCTTCAGCAGTCTCATATTCATTTGCAACCACAAGTATTATCTGCTCAGCAAGTTCAACAATTGCAACAGGTGCTGCCTCAGGGTCAGGTACAGATTCTCCACCAGCAACAGATACAGCAGCCTTCTGTGTCTTCATCTTATCAGACATACGGAGTTACAGGGCCTCCAAATGTGCAGGAAGTTGGTTATACCCACTTACAGACATCAGCTGTATCTGTTGGTGATCCTGCACGTTTCCCACAGGGGATTCATACTACACAAGAGTGGATGTGGAAAAATAAGCCAGCAGGCCTACGCTTTTCGCCCCTCCCCGCTCCTAGTCTTGATCTTAGAAGTGAAAATGATGAGTATATGATTGCTTGCATGAATTCCTTGACTCAATCTCAGTTAATCATTATTAGTGTAATTGAGCTTGGAGGGCCTGAACTTAAGGTGGCAAATAGGGACGTGAACCCTTAG 2124 0.46 MGVSEMVWIVIYQFQFNKLHESEVWVWYMVGSAAGQSAFFNIYWVAIGCCFIKYATSEEADQAIRALHNQHTLPGGVGPIQVRYADGERERLGAVEYKLFVGSLNKQATVDEVEEIFSKYGRVEDVYLMRDEMKQSRGCGFVKYAHRDMALAAINALNGIYTMRGCDQPLTVRFADPKRPRQGDSRGPAFPRPGFGPRFEAPAPCPPSNVNDPMGDRIPPPNAWRPMHRPNIGPSSNAGPHGMGPPLLPRSGGPAMPMNTGGPMSGFGGPLDGPFQGQSLSSMSQQNFNQPIPQIPPIGQQMSPMHKSMQSPLDLPPSAQLYPPASMPYIQTSMSLSSATQVGQSQLHFSRGTLPSQQVPGINGQLPASQRQGQQNALSAPMLQSPLDSSLQSNAALNTANQQRLPASVQQQQPLQPLQQSPSQLAQMLSQQTQTLQASFHSSQQAFSQLQQQVQMMQPSSQDLALQQNAEAAIKQVAASMPASASAADVPSSTSAAPAIPAINQNMALAKCNWTEHTSPEGFKYYYNSVTCESRWEKPEELTLFERQKQQQMLSLQQSHIHLQPQVLSAQQVQQLQQVLPQGQVQILHQQQIQQPSVSSSYQTYGVTGPPNVQEVGYTHLQTSAVSVGDPARFPQGIHTTQEWMWKNKPAGLRFSPLPAPSLDLRSENDEYMIACMNSLTQSQLIIISVIELGGPELKVANRDVNP 707
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0978 707 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 97 177 IPR000504 GO:0003723
Bisa08g0978 707 FunFam Flowering time control protein FCA 93 183 - -
Bisa08g0978 707 CDD WW 511 541 IPR001202 GO:0005515
Bisa08g0978 707 SMART rrm1_1 98 173 IPR000504 GO:0003723
Bisa08g0978 707 Gene3D - 16 92 IPR012677 -
Bisa08g0978 707 SUPERFAMILY RNA-binding domain, RBD 97 195 IPR035979 GO:0003676
Bisa08g0978 707 MobiDBLite consensus disorder prediction 352 378 - -
Bisa08g0978 707 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 99 165 IPR000504 GO:0003723
Bisa08g0978 707 MobiDBLite consensus disorder prediction 401 427 - -
Bisa08g0978 707 ProSitePatterns WW/rsp5/WWP domain signature. 514 539 IPR001202 GO:0005515
Bisa08g0978 707 ProSiteProfiles WW/rsp5/WWP domain profile. 514 541 IPR001202 GO:0005515
Bisa08g0978 707 MobiDBLite consensus disorder prediction 275 308 - -
Bisa08g0978 707 Gene3D - 509 553 - -
Bisa08g0978 707 SUPERFAMILY WW domain 513 545 IPR036020 GO:0005515
Bisa08g0978 707 Pfam WW domain 513 539 IPR001202 GO:0005515
Bisa08g0978 707 Gene3D - 93 185 IPR012677 -
Bisa08g0978 707 PANTHER RNA BINDING PROTEIN 48 470 - -
Bisa08g0978 707 MobiDBLite consensus disorder prediction 195 209 - -
Bisa08g0978 707 SUPERFAMILY RNA-binding domain, RBD 48 92 IPR035979 GO:0003676
Bisa08g0978 707 SMART ww_5 509 541 IPR001202 GO:0005515
Bisa08g0978 707 MobiDBLite consensus disorder prediction 174 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0978 Bisa-ChrBisa08 17732707 17745843 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0978 88 182 Eukaryotic Initiation Factors Gene Family AT1G71770 33.333 8.67e-08 53.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Bisa08g0978 08 17732707 17745843 Bisa08g0978 08 17732707 17745843 ECH