Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Bisa08g0931 ATGGGGTGGATTGTTCTGGGACCCACACGACTTGGGTACATGAGAGCCGCCCTGCCTATCGAGGCCCACACATTGACATCCCAGCCCATAGCCCATTACATCACCCACCAAAATTTCCTCCTTGGGCAGATAGCGGAACTCTATTATATGGCAACAGCAGAGGCAGCACCAGCTTCTCTTGGTCCCCGATATGCACCTGATGATCCCACTCTTCCAAAACCTTGGAAGGGATTGATCGATGGAAGCACAGGTCTATTATACTATTGGAATCCTGAAACCAACATCACCCAATATGAAAAGCCTACTGCGTTGCCACCACCCCTGCCTGCAGGTGCAATTCCTGTGGTTTCCGCACCCAAGCTGGCTCCCATACCAGTGGCTCATTCAATGCCATCCAGTGGTGTGGGGGCACAGCACGGACAGCAGTTATTACAAGCCTCTCACCAACAGGGACAACAAGTGAGCCACCTATCCCAACAGCAAACAATGCCACAACAGCAGAGTCCCCAGGTGGCACAGGTCAGTCAGCAGCAGCCTTCTCATGTGGCACAAGCTGGACAGCAACAGAGTTCACAGTCAGTGCTATCCATGCCACAGCCAAGTTTTCAGCAAGTCAGACAGCAGCAGATGTTACAGCCTGTGAATCCGCAAATGCCACAGCAGCAAATGCATCATCCGATGCCCCAACAAGCCATGCAACCACAACATTTTGGGCAAGGAGCCTCCCAGGATCATAATTCATATATGGCACAACCACAAGGCCATCAATTCACTCACCAGAACATGCATTACATGTCATATTCGCATAGCATGATTTCATCTGGGCAGCAAAGTGCCCAACCAATTCAGCATAACACACATGGCCAGCCATTGGAAAATCAACAGGAGTTTAAGGCAGCATTCCCAAAGATAGAGGAAGTAGATTATAAAAATGGAAACCAAGTTGGTCTTTCAACATCCCAGTATCAACAAAAGAGTGCCTTGCCTGTGCAAAACAATCAGAACATTCCTGCTAGAATTAATTCTGTCCAGATGCCACGTGCAGGTGTTAATGCTGGCCAACCACAACAGTTTGGTGGCATATCAGGCAGTATGCAACAACCTTCATCGGCAATGCATTCACAGCAGAATAGTTCTGATTTAGTTTATCAACATAGCTTGCAAAACCACATGGGCCCTGGAGAGCATGGTCAGCCATCAAATGTCCATCCTGTGGACCTAAAGATGGGGCATGAGGATAACTTACATGGTAGAGCTGGAAATGAGTATTACTACAACTCTAGCAAAGAGATGCCAGCAATGGGTTCTCAGCAGCCAAATATTGCACCTATACCTATTTCAAGAAATCAGCAGGATATGAGAATTGGCAGTTCCCCTTTTCAAAATGTAATGCCCAGTGGAAATGGGTTAAGTGGTATCCCCGGGCATGGTGTGCATAACATGTTTAATCCTCAAATAGGAGGACCTCCACCACATGCAAGTAATTCCTTGCCAAGGCCTCATGTAACTGATCTCTCACCTGCTGAGATTTATCGTCAGCAACATGAAGTTACAGCATCGGTCTGTGCTTATTCTGTAGTGCTTTCCACAGATTATTGTGCGATATCTGCTCCAGAGCAGGAGCATATGTCGTACGCTGCAGCAATTGTCACACTTACATGTGCAACTACTATCCTGATTTTTGGAGCCTGCAAAATGGATGGAGCCTTTCTTGGGCATCTTCTAGAAGGGTGGTTGGCCCTTTATTCAAATTTCACCTTATGTGACATATATTCTGCTGGCTTCTCAACTCCAACACCTATTCAAGCCCAAACATGGCCTGTTGCACTACAGGGTAGGGACATAGTGGCTATTGCCAAAACAGGCTCTGGAAAAACATTGGGTTATTTAATACCTGCATTTATGATCCTTAGACAGAGGCGTAACAATCCTCTGAATGGCCCGACAGTCTTGGTGTTGTCTCCAACACGTGAACTTGCAACACAGATTCAAGATGAGGCCATAAAATTTGGTCAATCTTCACGTTTCTCCTGCACGTGCTTGTATGGTGGAGCTCCCAAAGCTCTTCAGCTAAAAGAGTTAGATCGTGGAGCAGACATTGTTGTTGCTACACCTGGTCGGCTCAATGACATTCTTGAAATGAAGAAAATTGACTTTGGGCAAGTTTCGCTTCTTGTGCTGGATGAGGCTGATCGAATGCTTGATATGGGGTTTGAGCCTCAAATCCGTAAGATTGTGAACAAGATACCACCACGCAGGCAAACTCTTATGTACACAGCAACCTGGCCAAAAGAAGTACGAAAAATTGCCAGTGATCTTCTTGTTAATCCTGTCCAGGTTAACATTGGAAATGTTGATGAGCTTGCTGCAAACAAAGCTATCACACAGTATGTTGAGGTTGTCCCACAAATGGAGAAACAAAGGCGTTTAGAGCAGATAATCAGATCCCAAGATCGAGGTTCTAAGGTCATAATATTTTGCTCCACAAAGAGGTTATGTGATCAGCTTGCCCGTAGCATTGGCCGCAATTTTGGTGCTGCTGCAATTCATGGAGACAAGTCTCAAGGTGAAAGAGACTGGGTTTTAAATCAGTTTAGGACTGGCAAATCACCAATTCTGGTTGCCACTGATGTTGCTGCCCGTGGGCTTGACATTAAAGATATAAGGGTTGTAATCAACTATGATTTCCCCACTGGAGTTGAGGACTATGTACACCGAATTGGACGTACAGGAAGGGCTGGGGCCACTGGAGTGTCATACACCTTCTTCTCTGAGCAGGACTGGAAACATGCAGGTGACTTGATAAAAGTTTTGGAGGGTGCTAACCAGCTTGTGCCTCCAGAGTTACGACAGATGGCTTCACGTGGGCCAGCCAACTTTGTAAAGGATCGGGGTGGGATGAGTCGTTTTGACTCCGGTGGTGGTCGCTGGGAGACTGGTGGCCGTGGTGGCATGAGGGATGGTGGCTTTGGTGGTCGCGGTGGCATGAGGGATGGAAGCTTTGGTGGTCGCAGTGGCACAAGGGATGGAGGCTTTGGTGGTCGTGGTGGCATGAGGGATGGTCCCAGTGCACAAGGTGGAAGAGGTGATTTCTTTTCTGGTAGGGGCAATAGGGGTAGGGGAATGGGTGGCCCTCGTGGTGGTCATGTAGCTTGGGGTAGGGGCGAACGTGGACCACATGATCGTTACAATGTGGATGGGCGAGGACGAGGGCGTGGACGTGGACGCTTTGACAACAGAAGAGATGTTGGTTACAGGAGTAGAGGCAGAAGTTACAGTCGCAGCCCTGAAAGGGTTCGAACATGGGATTATAGCAGCAGGAGTCGCAGCAGGAGCAGGAGCAGGAGCAGGAGTAGGAGCTGGAGTAGGGGCCGTAGTCGAAGCAGCAGCTGGTCTCGTGATAGGAGTCGCAGCTATAGCCGTAGCCTTAGCCGGAGTCGCAGCCGCAGCCATAGCCGTCGCCGTAGCTGTCGAAGTTACAGTCGTAGCCGCAGTCGAAGCCCCAGCTATGATAGACATAACAGGTCAGATCAACAGATTTCTGATCAGATTGAGCATAGGGCACGAGGTTTAGAAGCTTCTGATCAAAGAATGTGCCCTATGTCTCCCAGCACCCAGGGGAACTCACTTCTGGGACCTGACCACGTGGAGCAGCTACCAGTTGCTGGGAGTACTGAGCCAGCTAATCCAGAGGCTGTAGTAGACCCTTGCTATCAGTCAGTTCCTAATGTCTAA 3735 0.4859 MGWIVLGPTRLGYMRAALPIEAHTLTSQPIAHYITHQNFLLGQIAELYYMATAEAAPASLGPRYAPDDPTLPKPWKGLIDGSTGLLYYWNPETNITQYEKPTALPPPLPAGAIPVVSAPKLAPIPVAHSMPSSGVGAQHGQQLLQASHQQGQQVSHLSQQQTMPQQQSPQVAQVSQQQPSHVAQAGQQQSSQSVLSMPQPSFQQVRQQQMLQPVNPQMPQQQMHHPMPQQAMQPQHFGQGASQDHNSYMAQPQGHQFTHQNMHYMSYSHSMISSGQQSAQPIQHNTHGQPLENQQEFKAAFPKIEEVDYKNGNQVGLSTSQYQQKSALPVQNNQNIPARINSVQMPRAGVNAGQPQQFGGISGSMQQPSSAMHSQQNSSDLVYQHSLQNHMGPGEHGQPSNVHPVDLKMGHEDNLHGRAGNEYYYNSSKEMPAMGSQQPNIAPIPISRNQQDMRIGSSPFQNVMPSGNGLSGIPGHGVHNMFNPQIGGPPPHASNSLPRPHVTDLSPAEIYRQQHEVTASVCAYSVVLSTDYCAISAPEQEHMSYAAAIVTLTCATTILIFGACKMDGAFLGHLLEGWLALYSNFTLCDIYSAGFSTPTPIQAQTWPVALQGRDIVAIAKTGSGKTLGYLIPAFMILRQRRNNPLNGPTVLVLSPTRELATQIQDEAIKFGQSSRFSCTCLYGGAPKALQLKELDRGADIVVATPGRLNDILEMKKIDFGQVSLLVLDEADRMLDMGFEPQIRKIVNKIPPRRQTLMYTATWPKEVRKIASDLLVNPVQVNIGNVDELAANKAITQYVEVVPQMEKQRRLEQIIRSQDRGSKVIIFCSTKRLCDQLARSIGRNFGAAAIHGDKSQGERDWVLNQFRTGKSPILVATDVAARGLDIKDIRVVINYDFPTGVEDYVHRIGRTGRAGATGVSYTFFSEQDWKHAGDLIKVLEGANQLVPPELRQMASRGPANFVKDRGGMSRFDSGGGRWETGGRGGMRDGGFGGRGGMRDGSFGGRSGTRDGGFGGRGGMRDGPSAQGGRGDFFSGRGNRGRGMGGPRGGHVAWGRGERGPHDRYNVDGRGRGRGRGRFDNRRDVGYRSRGRSYSRSPERVRTWDYSSRSRSRSRSRSRSRSWSRGRSRSSSWSRDRSRSYSRSLSRSRSRSHSRRRSCRSYSRSRSRSPSYDRHNRSDQQISDQIEHRARGLEASDQRMCPMSPSTQGNSLLGPDHVEQLPVAGSTEPANPEAVVDPCYQSVPNV 1244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Bisa08g0931 1244 CDD DEADc 593 780 - -
Bisa08g0931 1244 Gene3D - 65 103 - -
Bisa08g0931 1244 MobiDBLite consensus disorder prediction 1053 1110 - -
Bisa08g0931 1244 CDD SF2_C_DEAD 794 923 - -
Bisa08g0931 1244 SMART ultradead3 594 797 IPR014001 -
Bisa08g0931 1244 CDD WW 72 100 IPR001202 GO:0005515
Bisa08g0931 1244 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 726 734 IPR000629 -
Bisa08g0931 1244 ProSiteProfiles WW/rsp5/WWP domain profile. 69 103 IPR001202 GO:0005515
Bisa08g0931 1244 SUPERFAMILY WW domain 63 103 IPR036020 GO:0005515
Bisa08g0931 1244 MobiDBLite consensus disorder prediction 958 1211 - -
Bisa08g0931 1244 Gene3D - 785 956 IPR027417 -
Bisa08g0931 1244 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 809 953 IPR001650 -
Bisa08g0931 1244 Gene3D - 581 784 IPR027417 -
Bisa08g0931 1244 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 606 780 IPR014001 -
Bisa08g0931 1244 SMART helicmild6 830 914 IPR001650 -
Bisa08g0931 1244 Pfam WW domain 71 101 IPR001202 GO:0005515
Bisa08g0931 1244 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 646 929 IPR027417 -
Bisa08g0931 1244 MobiDBLite consensus disorder prediction 1165 1193 - -
Bisa08g0931 1244 MobiDBLite consensus disorder prediction 134 244 - -
Bisa08g0931 1244 Pfam DEAD/DEAH box helicase 599 769 IPR011545 GO:0003676|GO:0005524
Bisa08g0931 1244 SMART ww_5 70 103 IPR001202 GO:0005515
Bisa08g0931 1244 MobiDBLite consensus disorder prediction 129 244 - -
Bisa08g0931 1244 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 589 953 - -
Bisa08g0931 1244 FunFam ATP-dependent RNA helicase RhlB 784 956 - -
Bisa08g0931 1244 ProSitePatterns WW/rsp5/WWP domain signature. 75 101 IPR001202 GO:0005515
Bisa08g0931 1244 MobiDBLite consensus disorder prediction 1142 1161 - -
Bisa08g0931 1244 Pfam Helicase conserved C-terminal domain 806 914 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Bisa08g0931 Bisa-ChrBisa08 16820140 16827526 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Bisa08g0931 590 952 Eukaryotic Initiation Factors Gene Family AT3G19760 33.791 2.72e-63 219